Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y3Y entry

There are 2 chains in PDB entry 6Y3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 15	ILE 346
B	ASN 15	ILE 346

There are 14 helices in PDB entry 6Y3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	37	Right-handed 310
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	113	132	Right-handed alpha
Helix 5	AA5	A	271	276	Right-handed alpha
Helix 6	AA6	A	301	309	Right-handed alpha
Helix 7	AA7	A	310	313	Right-handed 310
Helix 8	AA8	B	33	37	Right-handed 310
Helix 9	AA9	B	40	44	Right-handed 310
Helix 10	AB1	B	71	78	Right-handed alpha
Helix 11	AB2	B	113	132	Right-handed alpha
Helix 12	AB3	B	271	276	Right-handed alpha
Helix 13	AB4	B	301	309	Right-handed alpha
Helix 14	AB5	B	310	313	Right-handed 310

There are 11 sheets in PDB entry 6Y3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	28	31	parallel
Strand 3	A	90	93	parallel
Strand 4	A	256	259	parallel
Strand 5	A	282	285	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	136	141	anti-parallel
Strand 3	A	243	248	anti-parallel
Strand 4	A	182	189	anti-parallel
Strand 5	A	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	237	240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	228	231	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	205	209	anti-parallel
Strand 3	B	205	209	anti-parallel
Strand 4	B	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	323	324	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	28	31	parallel
Strand 3	B	90	93	parallel
Strand 4	B	256	259	parallel
Strand 5	B	282	285	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	136	141	anti-parallel
Strand 3	B	243	248	anti-parallel
Strand 4	B	182	189	anti-parallel
Strand 5	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	168	first strand
Strand 2	B	237	240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	228	231	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	318	first strand
Strand 2	B	323	324	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3Y