Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y3Z entry

There are 4 chains in PDB entry 6Y3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 14	GLN 266
B	GLN 14	ASP 31
C	SER 2	SER 64
P	LEU 335	ASN 751

There are 31 helices in PDB entry 6Y3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	26	Right-handed alpha
Helix 2	AA2	A	41	55	Right-handed alpha
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	67	79	Right-handed alpha
Helix 5	AA5	A	88	100	Right-handed alpha
Helix 6	AA6	A	141	154	Right-handed alpha
Helix 7	AA7	A	157	161	Right-handed 310
Helix 8	AA8	A	207	214	Right-handed alpha
Helix 9	AA9	A	222	226	Right-handed 310
Helix 10	AB1	A	227	257	Right-handed alpha
Helix 11	AB2	B	15	23	Right-handed alpha
Helix 12	AB3	B	23	31	Right-handed alpha
Helix 13	AB4	C	52	54	Right-handed 310
Helix 14	AB5	P	344	346	Right-handed 310
Helix 15	AB6	P	347	352	Right-handed alpha
Helix 16	AB7	P	352	357	Right-handed alpha
Helix 17	AB8	P	386	390	Right-handed 310
Helix 18	AB9	P	392	398	Right-handed alpha
Helix 19	AC1	P	410	415	Right-handed alpha
Helix 20	AC2	P	415	428	Right-handed alpha
Helix 21	AC3	P	434	439	Right-handed alpha
Helix 22	AC4	P	453	458	Right-handed alpha
Helix 23	AC5	P	460	469	Right-handed alpha
Helix 24	AC6	P	494	508	Right-handed alpha
Helix 25	AC7	P	554	558	Right-handed 310
Helix 26	AC8	P	631	633	Right-handed 310
Helix 27	AC9	P	637	661	Right-handed alpha
Helix 28	AD1	P	699	703	Right-handed 310
Helix 29	AD2	P	708	723	Right-handed alpha
Helix 30	AD3	P	724	727	Right-handed 310
Helix 31	AD4	P	731	736	Right-handed alpha

There are 8 sheets in PDB entry 6Y3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	117	123	anti-parallel
Strand 3	A	104	112	anti-parallel
Strand 4	A	175	185	parallel
Strand 5	A	167	172	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	104	112	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	199	206	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	8	12	anti-parallel
Strand 3	C	56	61	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	26	first strand
Strand 2	C	30	37	anti-parallel
Strand 3	C	43	50	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	363	364	first strand
Strand 2	P	336	338	parallel
Strand 3	P	381	384	parallel
Strand 4	P	402	404	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	442	446	first strand
Strand 2	P	541	546	anti-parallel
Strand 3	P	476	479	anti-parallel
Strand 4	P	490	492	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	627	629	first strand
Strand 2	P	583	586	anti-parallel
Strand 3	P	562	571	anti-parallel
Strand 4	P	674	683	anti-parallel
Strand 5	P	689	696	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	627	629	first strand
Strand 2	P	583	586	anti-parallel
Strand 3	P	562	571	anti-parallel
Strand 4	P	575	579	anti-parallel
Strand 5	P	742	746	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3Z