Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y47 entry

There is 1 chain in PDB entry 6Y47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24PHE 721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6Y47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 41Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
80 82Right-handed 310
Helix 4
AA4
A
94 99Right-handed 310
Helix 5
AA5
A
117 119Right-handed 310
Helix 6
AA6
A
130 136Right-handed 310
Helix 7
AA7
A
216 220Right-handed 310
Helix 8
AA8
A
272 278Right-handed alpha
Helix 9
AA9
A
323 327Right-handed 310
Helix 10
AB1
A
331 335Right-handed 310
Helix 11
AB2
A
467 472Right-handed alpha
Helix 12
AB3
A
547 551Right-handed 310
Helix 13
AB4
A
647 652Right-handed 310
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There are 4 sheets in PDB entry 6Y47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
121 128anti-parallel
Strand 4
A
142 148anti-parallel
Strand 5
A
84 88parallel
Strand 6
A
91 92anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
73 76anti-parallel
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There are 23 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 166first strand
Strand 2
A
174 184anti-parallel
Strand 3
A
189 200anti-parallel
Strand 4
A
229 241anti-parallel
Strand 5
A
247 261anti-parallel
Strand 6
A
284 298anti-parallel
Strand 7
A
303 318anti-parallel
Strand 8
A
337 356anti-parallel
Strand 9
A
360 375anti-parallel
Strand 10
A
401 418anti-parallel
Strand 11
A
421 432anti-parallel
Strand 12
A
436 448anti-parallel
Strand 13
A
453 464anti-parallel
Strand 14
A
502 515anti-parallel
Strand 15
A
518 534anti-parallel
Strand 16
A
559 578anti-parallel
Strand 17
A
581 595anti-parallel
Strand 18
A
608 619anti-parallel
Strand 19
A
622 631anti-parallel
Strand 20
A
657 667anti-parallel
Strand 21
A
672 679anti-parallel
Strand 22
A
712 720anti-parallel
Strand 23
A
156 166anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 479first strand
Strand 2
A
491 494anti-parallel
Strand 3
A
554 557parallel
Strand 4
A
541 542anti-parallel
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