Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y48 entry

There are 4 chains in PDB entry 6Y48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 18	LYS 554
B	GLY 18	ARG 555
C	GLY 18	LYS 554
D	GLY 18	LYS 554

There are 91 helices in PDB entry 6Y48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	47	Right-handed alpha
Helix 2	AA2	A	62	67	Right-handed alpha
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	100	116	Right-handed alpha
Helix 5	AA5	A	117	119	Right-handed 310
Helix 6	AA6	A	169	174	Right-handed 310
Helix 7	AA7	A	183	185	Right-handed 310
Helix 8	AA8	A	203	214	Right-handed alpha
Helix 9	AA9	A	239	247	Right-handed alpha
Helix 10	AB1	A	249	258	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	277	292	Right-handed alpha
Helix 13	AB4	A	294	299	Right-handed alpha
Helix 14	AB5	A	307	324	Right-handed alpha
Helix 15	AB6	A	328	336	Right-handed alpha
Helix 16	AB7	A	354	359	Right-handed alpha
Helix 17	AB8	A	408	412	Right-handed 310
Helix 18	AB9	A	420	425	Right-handed alpha
Helix 19	AC1	A	452	456	Right-handed 310
Helix 20	AC2	A	457	480	Right-handed alpha
Helix 21	AC3	A	487	504	Right-handed alpha
Helix 22	AC4	A	532	543	Right-handed alpha
Helix 23	AC5	B	34	47	Right-handed alpha
Helix 24	AC6	B	62	67	Right-handed alpha
Helix 25	AC7	B	85	90	Right-handed alpha
Helix 26	AC8	B	100	116	Right-handed alpha
Helix 27	AC9	B	117	119	Right-handed 310
Helix 28	AD1	B	169	173	Right-handed 310
Helix 29	AD2	B	183	185	Right-handed 310
Helix 30	AD3	B	203	214	Right-handed alpha
Helix 31	AD4	B	239	247	Right-handed alpha
Helix 32	AD5	B	249	257	Right-handed alpha
Helix 33	AD6	B	258	260	Right-handed 310
Helix 34	AD7	B	272	276	Right-handed 310
Helix 35	AD8	B	277	292	Right-handed alpha
Helix 36	AD9	B	294	299	Right-handed alpha
Helix 37	AE1	B	307	324	Right-handed alpha
Helix 38	AE2	B	328	336	Right-handed alpha
Helix 39	AE3	B	356	361	Right-handed 310
Helix 40	AE4	B	407	411	Right-handed 310
Helix 41	AE5	B	420	425	Right-handed alpha
Helix 42	AE6	B	426	428	Right-handed 310
Helix 43	AE7	B	452	456	Right-handed 310
Helix 44	AE8	B	457	479	Right-handed alpha
Helix 45	AE9	B	487	504	Right-handed alpha
Helix 46	AF1	B	506	510	Right-handed 310
Helix 47	AF2	B	532	542	Right-handed alpha
Helix 48	AF3	C	34	47	Right-handed alpha
Helix 49	AF4	C	62	67	Right-handed alpha
Helix 50	AF5	C	85	90	Right-handed alpha
Helix 51	AF6	C	100	116	Right-handed alpha
Helix 52	AF7	C	117	119	Right-handed 310
Helix 53	AF8	C	169	173	Right-handed 310
Helix 54	AF9	C	183	185	Right-handed 310
Helix 55	AG1	C	203	214	Right-handed alpha
Helix 56	AG2	C	239	247	Right-handed alpha
Helix 57	AG3	C	249	258	Right-handed alpha
Helix 58	AG4	C	272	276	Right-handed 310
Helix 59	AG5	C	277	292	Right-handed alpha
Helix 60	AG6	C	294	299	Right-handed alpha
Helix 61	AG7	C	307	325	Right-handed alpha
Helix 62	AG8	C	328	336	Right-handed alpha
Helix 63	AG9	C	354	359	Right-handed alpha
Helix 64	AH1	C	406	411	Right-handed 310
Helix 65	AH2	C	420	425	Right-handed alpha
Helix 66	AH3	C	452	456	Right-handed 310
Helix 67	AH4	C	457	480	Right-handed alpha
Helix 68	AH5	C	487	504	Right-handed alpha
Helix 69	AH6	C	532	542	Right-handed alpha
Helix 70	AH7	D	34	47	Right-handed alpha
Helix 71	AH8	D	61	65	Right-handed 310
Helix 72	AH9	D	85	90	Right-handed alpha
Helix 73	AI1	D	100	116	Right-handed alpha
Helix 74	AI2	D	117	119	Right-handed 310
Helix 75	AI3	D	169	173	Right-handed 310
Helix 76	AI4	D	183	185	Right-handed 310
Helix 77	AI5	D	203	214	Right-handed alpha
Helix 78	AI6	D	239	245	Right-handed alpha
Helix 79	AI7	D	246	248	Right-handed 310
Helix 80	AI8	D	249	260	Right-handed alpha
Helix 81	AI9	D	272	276	Right-handed 310
Helix 82	AJ1	D	277	292	Right-handed alpha
Helix 83	AJ2	D	294	299	Right-handed alpha
Helix 84	AJ3	D	307	324	Right-handed alpha
Helix 85	AJ4	D	328	336	Right-handed alpha
Helix 86	AJ5	D	355	361	Right-handed 310
Helix 87	AJ6	D	407	411	Right-handed 310
Helix 88	AJ7	D	420	425	Right-handed alpha
Helix 89	AJ8	D	457	480	Right-handed alpha
Helix 90	AJ9	D	487	505	Right-handed alpha
Helix 91	AK1	D	532	542	Right-handed alpha

There are 24 sheets in PDB entry 6Y48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	148	151	parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	127	133	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	51	54	parallel
Strand 3	A	28	31	parallel
Strand 4	A	153	156	parallel
Strand 5	A	443	445	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	394	397	parallel
Strand 3	A	196	200	parallel
Strand 4	A	219	224	parallel
Strand 5	A	364	368	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	351	352	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	A	381	384	anti-parallel
Strand 3	A	389	391	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	486	first strand
Strand 2	A	550	553	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	51	54	parallel
Strand 3	B	23	31	parallel
Strand 4	B	148	156	parallel
Strand 5	B	138	143	anti-parallel
Strand 6	B	127	133	anti-parallel
Strand 7	B	413	414	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	51	54	parallel
Strand 3	B	23	31	parallel
Strand 4	B	148	156	parallel
Strand 5	B	443	445	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	394	397	parallel
Strand 3	B	196	200	parallel
Strand 4	B	219	224	parallel
Strand 5	B	364	368	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	351	352	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	377	first strand
Strand 2	B	381	384	anti-parallel
Strand 3	B	389	391	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	486	first strand
Strand 2	B	550	554	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	148	151	parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	127	133	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	51	54	parallel
Strand 3	C	28	31	parallel
Strand 4	C	153	156	parallel
Strand 5	C	443	445	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	394	397	parallel
Strand 3	C	196	200	parallel
Strand 4	C	219	224	parallel
Strand 5	C	364	368	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	351	352	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	377	first strand
Strand 2	C	381	384	anti-parallel
Strand 3	C	389	391	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	486	first strand
Strand 2	C	550	553	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	148	151	parallel
Strand 3	D	138	143	anti-parallel
Strand 4	D	127	133	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	51	54	parallel
Strand 3	D	28	31	parallel
Strand 4	D	153	156	parallel
Strand 5	D	443	445	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	394	397	parallel
Strand 3	D	196	200	parallel
Strand 4	D	219	224	parallel
Strand 5	D	364	368	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	351	352	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	377	first strand
Strand 2	D	381	384	anti-parallel
Strand 3	D	389	391	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	486	first strand
Strand 2	D	550	553	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y48

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y48