Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y4D entry

There are 2 chains in PDB entry 6Y4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35GLY 291
B
 MET 35GLY 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6Y4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 41Right-handed alpha
Helix 2
AA2
A
55 68Right-handed alpha
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
105 120Right-handed alpha
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
155 173Right-handed alpha
Helix 8
AA8
A
182 186Right-handed 310
Helix 9
AA9
A
192 213Right-handed alpha
Helix 10
AB1
A
214 216Right-handed 310
Helix 11
AB2
A
233 238Right-handed alpha
Helix 12
AB3
A
239 249Right-handed alpha
Helix 13
AB4
A
257 270Right-handed alpha
Helix 14
AB5
A
271 274Right-handed 310
Helix 15
AB6
B
36 41Right-handed alpha
Helix 16
AB7
B
55 68Right-handed alpha
Helix 17
AB8
B
78 92Right-handed alpha
Helix 18
AB9
B
105 120Right-handed alpha
Helix 19
AC1
B
138 142Right-handed 310
Helix 20
AC2
B
143 155Right-handed alpha
Helix 21
AC3
B
155 173Right-handed alpha
Helix 22
AC4
B
182 186Right-handed 310
Helix 23
AC5
B
192 213Right-handed alpha
Helix 24
AC6
B
214 216Right-handed 310
Helix 25
AC7
B
233 238Right-handed alpha
Helix 26
AC8
B
239 249Right-handed alpha
Helix 27
AC9
B
257 268Right-handed alpha
Helix 28
AD1
B
269 274Right-handed 310
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There are 2 sheets in PDB entry 6Y4D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
71 76parallel
Strand 3
A
47 51parallel
Strand 4
A
126 129parallel
Strand 5
A
175 180parallel
Strand 6
A
218 225parallel
Strand 7
A
280 283parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
71 76parallel
Strand 3
B
47 51parallel
Strand 4
B
126 129parallel
Strand 5
B
175 180parallel
Strand 6
B
218 225parallel
Strand 7
B
280 283parallel
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