Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y4J entry

There is 1 chain in PDB entry 6Y4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6Y4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
17 30Right-handed alpha
Helix 3
AA3
A
33 35Right-handed 310
Helix 4
AA4
A
64 77Right-handed alpha
Helix 5
AA5
A
80 82Right-handed 310
Helix 6
AA6
A
95 111Right-handed alpha
Helix 7
AA7
A
123 131Right-handed alpha
Helix 8
AA8
A
135 139Right-handed 310
Helix 9
AA9
A
154 170Right-handed alpha
Helix 10
AB1
A
177 179Right-handed 310
Helix 11
AB2
A
211 213Right-handed 310
Helix 12
AB3
A
214 219Right-handed alpha
Helix 13
AB4
A
238 244Right-handed alpha
Helix 14
AB5
A
309 324Right-handed alpha
Helix 15
AB6
A
325 328Right-handed 310
Helix 16
AB7
A
369 373Right-handed 310
Helix 17
AB8
A
375 385Right-handed alpha
Helix 18
AB9
A
389 396Right-handed alpha
Helix 19
AC1
A
418 420Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6Y4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
37 41parallel
Strand 3
A
10 13parallel
Strand 4
A
206 209parallel
Strand 5
A
359 363parallel
Strand 6
A
349 352anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
151 153anti-parallel
Strand 3
A
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
143 147anti-parallel
Strand 3
A
89 93anti-parallel
Strand 4
A
250 253parallel
Strand 5
A
257 259anti-parallel
Strand 6
A
267 271anti-parallel
Strand 7
A
225 236anti-parallel
Strand 8
A
333 343anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 187first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
201 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
415 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 295anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il