Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y50

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y50 entry

There are 9 chains in PDB entry 6Y50 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
9	ILE 392	GLN 498
y	PRO 6	LEU 98
x	GLN 15	ALA 80
8	ASN 458	GLU 598
v	MET 1	PHE 1217
u	ASN 463	LEU 1304
2	G 12	U 65
q	VAL 127	LEU 220
p	LYS 146	LYS 196

There are 92 helices in PDB entry 6Y50. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	9	393	401	Right-handed alpha
Helix 2	AA2	9	418	425	Right-handed alpha
Helix 3	AA3	9	428	439	Right-handed alpha
Helix 4	AA4	9	452	462	Right-handed alpha
Helix 5	AA5	9	490	498	Right-handed alpha
Helix 6	AA6	y	46	50	Right-handed 310
Helix 7	AA7	y	51	55	Right-handed 310
Helix 8	AA8	y	73	77	Right-handed alpha
Helix 9	AA9	x	27	40	Right-handed alpha
Helix 10	AB1	x	40	45	Right-handed alpha
Helix 11	AB2	x	47	52	Right-handed alpha
Helix 12	AB3	x	52	57	Right-handed alpha
Helix 13	AB4	x	60	72	Right-handed alpha
Helix 14	AB5	8	463	468	Right-handed alpha
Helix 15	AB6	8	471	475	Right-handed 310
Helix 16	AB7	8	477	482	Right-handed 310
Helix 17	AB8	8	484	493	Right-handed alpha
Helix 18	AB9	8	525	530	Right-handed alpha
Helix 19	AC1	8	571	576	Right-handed alpha
Helix 20	AC2	v	198	202	Right-handed 310
Helix 21	AC3	v	559	561	Right-handed 310
Helix 22	AC4	v	808	824	Right-handed alpha
Helix 23	AC5	v	835	845	Right-handed alpha
Helix 24	AC6	v	848	853	Right-handed alpha
Helix 25	AC7	v	930	934	Right-handed 310
Helix 26	AC8	v	1134	1152	Right-handed alpha
Helix 27	AC9	v	1175	1180	Right-handed alpha
Helix 28	AD1	v	1186	1197	Right-handed alpha
Helix 29	AD2	v	1200	1216	Right-handed alpha
Helix 30	AD3	u	468	472	Right-handed 310
Helix 31	AD4	u	492	506	Right-handed alpha
Helix 32	AD5	u	508	521	Right-handed alpha
Helix 33	AD6	u	522	526	Right-handed 310
Helix 34	AD7	u	527	541	Right-handed alpha
Helix 35	AD8	u	545	563	Right-handed alpha
Helix 36	AD9	u	564	569	Right-handed 310
Helix 37	AE1	u	570	583	Right-handed alpha
Helix 38	AE2	u	586	604	Right-handed alpha
Helix 39	AE3	u	605	614	Right-handed alpha
Helix 40	AE4	u	615	619	Right-handed 310
Helix 41	AE5	u	621	639	Right-handed alpha
Helix 42	AE6	u	640	653	Right-handed alpha
Helix 43	AE7	u	657	676	Right-handed alpha
Helix 44	AE8	u	677	680	Right-handed 310
Helix 45	AE9	u	681	691	Right-handed alpha
Helix 46	AF1	u	692	694	Right-handed 310
Helix 47	AF2	u	698	716	Right-handed alpha
Helix 48	AF3	u	722	726	Right-handed 310
Helix 49	AF4	u	727	734	Right-handed alpha
Helix 50	AF5	u	735	737	Right-handed 310
Helix 51	AF6	u	740	757	Right-handed alpha
Helix 52	AF7	u	759	774	Right-handed alpha
Helix 53	AF8	u	781	798	Right-handed alpha
Helix 54	AF9	u	802	810	Right-handed alpha
Helix 55	AG1	u	810	818	Right-handed alpha
Helix 56	AG2	u	820	824	Right-handed 310
Helix 57	AG3	u	826	845	Right-handed alpha
Helix 58	AG4	u	845	851	Right-handed alpha
Helix 59	AG5	u	861	880	Right-handed alpha
Helix 60	AG6	u	885	902	Right-handed alpha
Helix 61	AG7	u	907	922	Right-handed alpha
Helix 62	AG8	u	923	926	Right-handed 310
Helix 63	AG9	u	928	941	Right-handed alpha
Helix 64	AH1	u	944	958	Right-handed alpha
Helix 65	AH2	u	958	963	Right-handed alpha
Helix 66	AH3	u	969	979	Right-handed alpha
Helix 67	AH4	u	986	1004	Right-handed alpha
Helix 68	AH5	u	1012	1025	Right-handed alpha
Helix 69	AH6	u	1028	1043	Right-handed alpha
Helix 70	AH7	u	1051	1063	Right-handed alpha
Helix 71	AH8	u	1064	1066	Right-handed 310
Helix 72	AH9	u	1070	1089	Right-handed alpha
Helix 73	AI1	u	1089	1103	Right-handed alpha
Helix 74	AI2	u	1108	1123	Right-handed alpha
Helix 75	AI3	u	1124	1127	Right-handed 310
Helix 76	AI4	u	1128	1134	Right-handed alpha
Helix 77	AI5	u	1135	1137	Right-handed 310
Helix 78	AI6	u	1140	1158	Right-handed alpha
Helix 79	AI7	u	1159	1162	Right-handed 310
Helix 80	AI8	u	1169	1178	Right-handed alpha
Helix 81	AI9	u	1185	1197	Right-handed alpha
Helix 82	AJ1	u	1204	1216	Right-handed alpha
Helix 83	AJ2	u	1217	1220	Right-handed 310
Helix 84	AJ3	u	1223	1242	Right-handed alpha
Helix 85	AJ4	u	1242	1251	Right-handed alpha
Helix 86	AJ5	u	1261	1275	Right-handed alpha
Helix 87	AJ6	u	1280	1284	Right-handed 310
Helix 88	AJ7	u	1297	1301	Right-handed 310
Helix 89	AJ8	q	145	155	Right-handed alpha
Helix 90	AJ9	q	190	201	Right-handed alpha
Helix 91	AK1	p	148	179	Right-handed alpha
Helix 92	AK2	p	189	194	Right-handed alpha

There are 28 sheets in PDB entry 6Y50. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	406	408	first strand
Strand 2	9	414	416	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	18	19	first strand
Strand 2	y	44	45	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	39	42	first strand
Strand 2	y	70	72	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	1104	1107	first strand
Strand 2	v	1116	1119	anti-parallel
Strand 3	v	1127	1131	anti-parallel
Strand 4	v	3	6	anti-parallel
Strand 5	v	1173	1174	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	18	20	first strand
Strand 2	v	29	33	anti-parallel
Strand 3	v	37	43	anti-parallel
Strand 4	v	50	57	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	65	66	first strand
Strand 2	v	78	80	anti-parallel
Strand 3	v	87	90	anti-parallel
Strand 4	v	101	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	120	122	first strand
Strand 2	v	130	133	anti-parallel
Strand 3	v	139	142	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	144	146	first strand
Strand 2	v	152	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	165	173	first strand
Strand 2	v	181	188	anti-parallel
Strand 3	v	207	212	anti-parallel
Strand 4	v	221	227	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	237	238	first strand
Strand 2	v	247	252	anti-parallel
Strand 3	v	255	259	anti-parallel
Strand 4	v	267	270	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	302	304	first strand
Strand 2	v	310	312	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	316	317	first strand
Strand 2	v	322	324	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	336	342	first strand
Strand 2	v	346	351	anti-parallel
Strand 3	v	356	360	anti-parallel
Strand 4	v	396	401	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	407	413	first strand
Strand 2	v	422	427	anti-parallel
Strand 3	v	434	440	anti-parallel
Strand 4	v	774	780	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	442	443	first strand
Strand 2	v	728	735	parallel
Strand 3	v	720	725	anti-parallel
Strand 4	v	709	715	anti-parallel
Strand 5	v	700	706	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	448	450	first strand
Strand 2	v	761	765	anti-parallel
Strand 3	v	753	758	anti-parallel
Strand 4	v	741	745	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	458	463	first strand
Strand 2	v	471	477	anti-parallel
Strand 3	v	482	486	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	507	509	first strand
Strand 2	v	516	520	anti-parallel
Strand 3	v	523	527	anti-parallel
Strand 4	v	533	537	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	546	548	first strand
Strand 2	v	553	558	anti-parallel
Strand 3	v	562	567	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	589	592	first strand
Strand 2	v	605	608	anti-parallel
Strand 3	v	613	618	anti-parallel
Strand 4	v	626	632	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	637	643	first strand
Strand 2	v	664	669	anti-parallel
Strand 3	v	673	678	anti-parallel
Strand 4	v	686	690	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	784	787	first strand
Strand 2	v	797	804	anti-parallel
Strand 3	v	862	869	anti-parallel
Strand 4	v	876	881	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	891	894	first strand
Strand 2	v	904	911	anti-parallel
Strand 3	v	922	928	anti-parallel
Strand 4	v	939	945	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	959	963	first strand
Strand 2	v	966	971	anti-parallel
Strand 3	v	978	983	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	999	1003	first strand
Strand 2	v	1009	1015	anti-parallel
Strand 3	v	1020	1022	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	1025	1026	first strand
Strand 2	v	1087	1088	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	1036	1037	first strand
Strand 2	v	1043	1047	anti-parallel
Strand 3	v	1052	1057	anti-parallel
Strand 4	v	1090	1096	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	183	187	first strand
Strand 2	q	134	138	anti-parallel
Strand 3	q	210	214	anti-parallel
Strand 4	q	204	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y50

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y50