Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y56 entry

There is 1 chain in PDB entry 6Y56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3SER 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6Y56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
19 40Right-handed alpha
Helix 4
AA4
A
51 59Right-handed alpha
Helix 5
AA5
A
60 64Right-handed 310
Helix 6
AA6
A
76 88Right-handed alpha
Helix 7
AA7
A
146 152Right-handed 310
Helix 8
AA8
A
163 176Right-handed alpha
Helix 9
AA9
A
180 191Right-handed alpha
Helix 10
AB1
A
196 214Right-handed alpha
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
232 236Right-handed 310
Helix 13
AB4
A
240 245Right-handed alpha
Helix 14
AB5
A
249 261Right-handed alpha
Helix 15
AB6
A
262 266Right-handed 310
Helix 16
AB7
A
268 275Right-handed alpha
Helix 17
AB8
A
276 277Right-handed 310
Helix 18
AB9
A
278 280Right-handed 310
Helix 19
AC1
A
281 294Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6Y56. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
126 130parallel
Strand 4
A
108 115anti-parallel
Strand 5
A
95 101anti-parallel
Strand 6
A
91 92anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
158 161anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il