Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y59 entry

There are 5 chains in PDB entry 6Y59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	SER 462
B	THR 8	SER 462
C	THR 8	SER 462
D	THR 8	SER 462
E	THR 8	SER 462

There are 55 helices in PDB entry 6Y59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed 310
Helix 3	AA3	A	91	93	Right-handed 310
Helix 4	AA4	A	170	177	Right-handed alpha
Helix 5	AA5	A	220	242	Right-handed alpha
Helix 6	AA6	A	248	273	Right-handed alpha
Helix 7	AA7	A	281	309	Right-handed alpha
Helix 8	AA8	A	318	333	Right-handed alpha
Helix 9	AA9	A	403	415	Right-handed alpha
Helix 10	AB1	A	416	418	Right-handed 310
Helix 11	AB2	A	419	462	Right-handed alpha
Helix 12	AB3	B	10	21	Right-handed alpha
Helix 13	AB4	B	76	80	Right-handed 310
Helix 14	AB5	B	91	93	Right-handed 310
Helix 15	AB6	B	170	177	Right-handed alpha
Helix 16	AB7	B	220	242	Right-handed alpha
Helix 17	AB8	B	248	273	Right-handed alpha
Helix 18	AB9	B	281	309	Right-handed alpha
Helix 19	AC1	B	318	333	Right-handed alpha
Helix 20	AC2	B	403	415	Right-handed alpha
Helix 21	AC3	B	416	418	Right-handed 310
Helix 22	AC4	B	419	462	Right-handed alpha
Helix 23	AC5	C	10	21	Right-handed alpha
Helix 24	AC6	C	76	80	Right-handed 310
Helix 25	AC7	C	91	93	Right-handed 310
Helix 26	AC8	C	170	177	Right-handed alpha
Helix 27	AC9	C	220	242	Right-handed alpha
Helix 28	AD1	C	248	273	Right-handed alpha
Helix 29	AD2	C	281	309	Right-handed alpha
Helix 30	AD3	C	318	333	Right-handed alpha
Helix 31	AD4	C	403	415	Right-handed alpha
Helix 32	AD5	C	416	418	Right-handed 310
Helix 33	AD6	C	419	462	Right-handed alpha
Helix 34	AD7	D	10	21	Right-handed alpha
Helix 35	AD8	D	76	80	Right-handed 310
Helix 36	AD9	D	91	93	Right-handed 310
Helix 37	AE1	D	170	177	Right-handed alpha
Helix 38	AE2	D	220	242	Right-handed alpha
Helix 39	AE3	D	248	273	Right-handed alpha
Helix 40	AE4	D	281	309	Right-handed alpha
Helix 41	AE5	D	318	333	Right-handed alpha
Helix 42	AE6	D	403	415	Right-handed alpha
Helix 43	AE7	D	416	418	Right-handed 310
Helix 44	AE8	D	419	462	Right-handed alpha
Helix 45	AE9	E	10	21	Right-handed alpha
Helix 46	AF1	E	76	80	Right-handed 310
Helix 47	AF2	E	91	93	Right-handed 310
Helix 48	AF3	E	170	177	Right-handed alpha
Helix 49	AF4	E	220	242	Right-handed alpha
Helix 50	AF5	E	248	273	Right-handed alpha
Helix 51	AF6	E	281	309	Right-handed alpha
Helix 52	AF7	E	318	333	Right-handed alpha
Helix 53	AF8	E	403	415	Right-handed alpha
Helix 54	AF9	E	416	418	Right-handed 310
Helix 55	AG1	E	419	462	Right-handed alpha

There are 25 sheets in PDB entry 6Y59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	65	74	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	114	118	anti-parallel
Strand 5	A	85	89	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	52	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	130	134	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	153	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	216	217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	207	214	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	65	74	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	114	118	anti-parallel
Strand 5	B	85	89	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	52	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	130	134	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	153	155	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	216	217	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	207	214	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	65	74	anti-parallel
Strand 3	C	120	124	anti-parallel
Strand 4	C	114	118	anti-parallel
Strand 5	C	85	89	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	52	first strand
Strand 2	C	57	62	anti-parallel
Strand 3	C	130	134	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	153	155	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	216	217	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	199	first strand
Strand 2	C	207	214	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	65	74	anti-parallel
Strand 3	D	120	124	anti-parallel
Strand 4	D	114	118	anti-parallel
Strand 5	D	85	89	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	52	first strand
Strand 2	D	57	62	anti-parallel
Strand 3	D	130	134	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	153	155	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	216	217	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	199	first strand
Strand 2	D	207	214	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	42	first strand
Strand 2	E	65	74	anti-parallel
Strand 3	E	120	124	anti-parallel
Strand 4	E	114	118	anti-parallel
Strand 5	E	85	89	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	52	first strand
Strand 2	E	57	62	anti-parallel
Strand 3	E	130	134	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	153	155	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	216	217	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	199	first strand
Strand 2	E	207	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y59

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y59