Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5A entry

There are 5 chains in PDB entry 6Y5A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	SER 462
C	THR 8	SER 462
D	THR 8	SER 462
B	THR 8	SER 462
E	THR 8	SER 462

There are 51 helices in PDB entry 6Y5A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	76	81	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	170	176	Right-handed alpha
Helix 5	AA5	A	220	244	Right-handed alpha
Helix 6	AA6	A	248	273	Right-handed alpha
Helix 7	AA7	A	282	309	Right-handed alpha
Helix 8	AA8	A	318	333	Right-handed alpha
Helix 9	AA9	A	402	415	Right-handed alpha
Helix 10	AB1	A	416	418	Right-handed 310
Helix 11	AB2	A	420	462	Right-handed alpha
Helix 12	AB3	C	10	21	Right-handed alpha
Helix 13	AB4	C	89	93	Right-handed 310
Helix 14	AB5	C	170	176	Right-handed alpha
Helix 15	AB6	C	220	227	Right-handed alpha
Helix 16	AB7	C	227	244	Right-handed alpha
Helix 17	AB8	C	250	271	Right-handed alpha
Helix 18	AB9	C	282	308	Right-handed alpha
Helix 19	AC1	C	321	333	Right-handed alpha
Helix 20	AC2	C	404	417	Right-handed alpha
Helix 21	AC3	C	422	462	Right-handed alpha
Helix 22	AC4	D	10	21	Right-handed alpha
Helix 23	AC5	D	91	93	Right-handed 310
Helix 24	AC6	D	170	176	Right-handed alpha
Helix 25	AC7	D	220	244	Right-handed alpha
Helix 26	AC8	D	250	273	Right-handed alpha
Helix 27	AC9	D	282	311	Right-handed alpha
Helix 28	AD1	D	318	333	Right-handed alpha
Helix 29	AD2	D	400	404	Right-handed alpha
Helix 30	AD3	D	404	418	Right-handed alpha
Helix 31	AD4	D	422	462	Right-handed alpha
Helix 32	AD5	B	10	21	Right-handed alpha
Helix 33	AD6	B	89	93	Right-handed 310
Helix 34	AD7	B	170	176	Right-handed alpha
Helix 35	AD8	B	220	227	Right-handed alpha
Helix 36	AD9	B	227	244	Right-handed alpha
Helix 37	AE1	B	247	273	Right-handed alpha
Helix 38	AE2	B	282	309	Right-handed alpha
Helix 39	AE3	B	321	333	Right-handed alpha
Helix 40	AE4	B	402	418	Right-handed alpha
Helix 41	AE5	B	423	462	Right-handed alpha
Helix 42	AE6	E	10	21	Right-handed alpha
Helix 43	AE7	E	76	81	Right-handed 310
Helix 44	AE8	E	170	177	Right-handed alpha
Helix 45	AE9	E	220	227	Right-handed alpha
Helix 46	AF1	E	227	241	Right-handed alpha
Helix 47	AF2	E	248	273	Right-handed alpha
Helix 48	AF3	E	281	309	Right-handed alpha
Helix 49	AF4	E	319	332	Right-handed alpha
Helix 50	AF5	E	402	416	Right-handed alpha
Helix 51	AF6	E	421	462	Right-handed alpha

There are 13 sheets in PDB entry 6Y5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	115	118	anti-parallel
Strand 3	A	122	134	anti-parallel
Strand 4	A	57	69	anti-parallel
Strand 5	A	39	50	anti-parallel
Strand 6	A	165	167	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	207	218	anti-parallel
Strand 4	A	187	199	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	115	118	anti-parallel
Strand 3	C	122	134	anti-parallel
Strand 4	C	57	69	anti-parallel
Strand 5	C	37	50	anti-parallel
Strand 6	C	163	167	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	153	155	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	207	218	anti-parallel
Strand 3	C	187	199	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	122	134	anti-parallel
Strand 4	D	57	69	anti-parallel
Strand 5	D	39	50	anti-parallel
Strand 6	D	165	167	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	153	155	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	206	218	anti-parallel
Strand 3	D	187	200	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	115	118	anti-parallel
Strand 3	B	122	134	anti-parallel
Strand 4	B	57	69	anti-parallel
Strand 5	B	37	52	anti-parallel
Strand 6	B	163	167	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	153	155	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	207	218	anti-parallel
Strand 3	B	187	199	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	134	anti-parallel
Strand 4	E	57	67	anti-parallel
Strand 5	E	39	52	anti-parallel
Strand 6	E	165	167	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	146	155	anti-parallel
Strand 3	E	206	218	anti-parallel
Strand 4	E	187	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5A