Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5B entry

There are 5 chains in PDB entry 6Y5B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	SER 462
B	THR 8	SER 462
C	THR 8	SER 462
D	THR 8	SER 462
E	THR 8	SER 462

There are 49 helices in PDB entry 6Y5B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	91	93	Right-handed 310
Helix 3	AA3	A	170	177	Right-handed alpha
Helix 4	AA4	A	220	244	Right-handed alpha
Helix 5	AA5	A	248	273	Right-handed alpha
Helix 6	AA6	A	281	310	Right-handed alpha
Helix 7	AA7	A	319	333	Right-handed alpha
Helix 8	AA8	A	405	422	Right-handed alpha
Helix 9	AA9	A	425	434	Right-handed alpha
Helix 10	AB1	A	434	461	Right-handed alpha
Helix 11	AB2	B	10	21	Right-handed alpha
Helix 12	AB3	B	91	93	Right-handed 310
Helix 13	AB4	B	170	176	Right-handed alpha
Helix 14	AB5	B	220	244	Right-handed alpha
Helix 15	AB6	B	248	273	Right-handed alpha
Helix 16	AB7	B	281	309	Right-handed alpha
Helix 17	AB8	B	318	328	Right-handed alpha
Helix 18	AB9	B	404	414	Right-handed alpha
Helix 19	AC1	B	414	460	Right-handed alpha
Helix 20	AC2	C	10	21	Right-handed alpha
Helix 21	AC3	C	76	81	Right-handed 310
Helix 22	AC4	C	91	93	Right-handed 310
Helix 23	AC5	C	141	144	Right-handed 310
Helix 24	AC6	C	170	176	Right-handed alpha
Helix 25	AC7	C	220	244	Right-handed alpha
Helix 26	AC8	C	249	273	Right-handed alpha
Helix 27	AC9	C	281	309	Right-handed alpha
Helix 28	AD1	C	318	332	Right-handed alpha
Helix 29	AD2	C	405	416	Right-handed alpha
Helix 30	AD3	C	419	462	Right-handed alpha
Helix 31	AD4	D	10	21	Right-handed alpha
Helix 32	AD5	D	91	93	Right-handed 310
Helix 33	AD6	D	170	176	Right-handed alpha
Helix 34	AD7	D	220	243	Right-handed alpha
Helix 35	AD8	D	249	273	Right-handed alpha
Helix 36	AD9	D	282	309	Right-handed alpha
Helix 37	AE1	D	319	330	Right-handed alpha
Helix 38	AE2	D	404	419	Right-handed alpha
Helix 39	AE3	D	419	462	Right-handed alpha
Helix 40	AE4	E	10	20	Right-handed alpha
Helix 41	AE5	E	76	81	Right-handed 310
Helix 42	AE6	E	91	93	Right-handed 310
Helix 43	AE7	E	170	177	Right-handed alpha
Helix 44	AE8	E	220	243	Right-handed alpha
Helix 45	AE9	E	248	273	Right-handed alpha
Helix 46	AF1	E	281	309	Right-handed alpha
Helix 47	AF2	E	318	332	Right-handed alpha
Helix 48	AF3	E	405	418	Right-handed alpha
Helix 49	AF4	E	422	462	Right-handed alpha

There are 19 sheets in PDB entry 6Y5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	52	first strand
Strand 2	A	57	74	anti-parallel
Strand 3	A	127	134	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	57	74	anti-parallel
Strand 5	A	39	42	anti-parallel
Strand 6	A	165	167	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	154	155	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	207	218	anti-parallel
Strand 3	A	187	199	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	114	117	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	57	74	anti-parallel
Strand 5	B	127	134	anti-parallel
Strand 6	B	103	105	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	114	117	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	57	74	anti-parallel
Strand 5	B	39	52	anti-parallel
Strand 6	B	165	167	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	154	155	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	206	218	anti-parallel
Strand 3	B	187	200	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	120	134	anti-parallel
Strand 4	C	57	74	anti-parallel
Strand 5	C	39	52	anti-parallel
Strand 6	C	165	167	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	152	155	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	213	218	anti-parallel
Strand 3	C	187	193	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	52	first strand
Strand 2	D	57	69	anti-parallel
Strand 3	D	127	134	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	122	124	anti-parallel
Strand 4	D	57	69	anti-parallel
Strand 5	D	39	42	anti-parallel
Strand 6	D	165	167	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	154	155	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	205	218	anti-parallel
Strand 3	D	187	202	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	52	first strand
Strand 2	E	57	69	anti-parallel
Strand 3	E	127	134	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	122	124	anti-parallel
Strand 4	E	57	69	anti-parallel
Strand 5	E	39	42	anti-parallel
Strand 6	E	165	167	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	153	155	anti-parallel
Strand 3	E	207	218	anti-parallel
Strand 4	E	148	149	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	153	155	anti-parallel
Strand 3	E	207	218	anti-parallel
Strand 4	E	187	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5B