Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5D entry

There are 22 chains in PDB entry 6Y5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 39	GLU 134
B	LEU 23	GLY 103
C	ARG 12	PRO 118
D	SER 33	ALA 125
E	PRO 39	GLU 134
F	LYS 21	GLY 103
G	ARG 12	LYS 119
H	ARG 32	ALA 125
I	A 1	T 153
J	A 1	T 153
K	GLY 161	PHE 522
L	GLY 161	PHE 522
M	PRO 39	GLU 134
N	ASP 25	GLY 103
O	LYS 14	PRO 118
P	GLU 36	ALA 125
Q	ARG 41	GLU 134
R	ASP 25	PHE 101
S	ARG 12	GLN 113
T	SER 33	ALA 125
U	A 1	T 153
V	A 1	T 153

There are103 helices in PDB entry 6Y5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	B	25	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	93	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	28	36	Right-handed alpha
Helix 11	AB2	C	46	74	Right-handed alpha
Helix 12	AB3	C	80	90	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	C	113	117	Right-handed 310
Helix 15	AB6	D	38	50	Right-handed alpha
Helix 16	AB7	D	56	85	Right-handed alpha
Helix 17	AB8	D	91	103	Right-handed alpha
Helix 18	AB9	D	105	125	Right-handed alpha
Helix 19	AC1	E	45	58	Right-handed alpha
Helix 20	AC2	E	64	80	Right-handed alpha
Helix 21	AC3	E	86	115	Right-handed alpha
Helix 22	AC4	E	121	133	Right-handed alpha
Helix 23	AC5	F	26	30	Right-handed 310
Helix 24	AC6	F	31	42	Right-handed alpha
Helix 25	AC7	F	50	77	Right-handed alpha
Helix 26	AC8	F	83	94	Right-handed alpha
Helix 27	AC9	G	17	23	Right-handed alpha
Helix 28	AD1	G	28	35	Right-handed alpha
Helix 29	AD2	G	47	74	Right-handed alpha
Helix 30	AD3	G	80	91	Right-handed alpha
Helix 31	AD4	G	91	98	Right-handed alpha
Helix 32	AD5	G	113	117	Right-handed 310
Helix 33	AD6	H	38	50	Right-handed alpha
Helix 34	AD7	H	56	85	Right-handed alpha
Helix 35	AD8	H	91	103	Right-handed alpha
Helix 36	AD9	H	106	123	Right-handed alpha
Helix 37	AE1	K	162	175	Right-handed alpha
Helix 38	AE2	K	176	178	Right-handed 310
Helix 39	AE3	K	179	200	Right-handed alpha
Helix 40	AE4	K	260	264	Right-handed 310
Helix 41	AE5	K	272	289	Right-handed alpha
Helix 42	AE6	K	331	335	Right-handed 310
Helix 43	AE7	K	345	353	Right-handed alpha
Helix 44	AE8	K	379	388	Right-handed alpha
Helix 45	AE9	K	399	403	Right-handed 310
Helix 46	AF1	K	405	424	Right-handed alpha
Helix 47	AF2	K	434	449	Right-handed alpha
Helix 48	AF3	K	451	458	Right-handed 310
Helix 49	AF4	K	459	478	Right-handed alpha
Helix 50	AF5	K	497	513	Right-handed alpha
Helix 51	AF6	K	514	515	Right-handed 310
Helix 52	AF7	K	516	520	Right-handed 310
Helix 53	AF8	L	162	175	Right-handed alpha
Helix 54	AF9	L	176	178	Right-handed 310
Helix 55	AG1	L	179	200	Right-handed alpha
Helix 56	AG2	L	260	264	Right-handed 310
Helix 57	AG3	L	272	288	Right-handed alpha
Helix 58	AG4	L	289	291	Right-handed 310
Helix 59	AG5	L	331	335	Right-handed 310
Helix 60	AG6	L	345	353	Right-handed alpha
Helix 61	AG7	L	379	389	Right-handed alpha
Helix 62	AG8	L	399	403	Right-handed 310
Helix 63	AG9	L	405	424	Right-handed alpha
Helix 64	AH1	L	434	449	Right-handed alpha
Helix 65	AH2	L	451	458	Right-handed 310
Helix 66	AH3	L	459	477	Right-handed alpha
Helix 67	AH4	L	497	514	Right-handed alpha
Helix 68	AH5	L	515	520	Right-handed 310
Helix 69	AH6	M	45	58	Right-handed alpha
Helix 70	AH7	M	64	77	Right-handed alpha
Helix 71	AH8	M	86	115	Right-handed alpha
Helix 72	AH9	M	121	132	Right-handed alpha
Helix 73	AI1	N	26	30	Right-handed alpha
Helix 74	AI2	N	31	42	Right-handed alpha
Helix 75	AI3	N	50	77	Right-handed alpha
Helix 76	AI4	N	83	93	Right-handed alpha
Helix 77	AI5	O	17	22	Right-handed alpha
Helix 78	AI6	O	28	37	Right-handed alpha
Helix 79	AI7	O	47	74	Right-handed alpha
Helix 80	AI8	O	80	90	Right-handed alpha
Helix 81	AI9	O	91	98	Right-handed alpha
Helix 82	AJ1	O	113	117	Right-handed 310
Helix 83	AJ2	P	38	50	Right-handed alpha
Helix 84	AJ3	P	56	85	Right-handed alpha
Helix 85	AJ4	P	91	103	Right-handed alpha
Helix 86	AJ5	P	105	125	Right-handed alpha
Helix 87	AJ6	Q	45	58	Right-handed alpha
Helix 88	AJ7	Q	64	77	Right-handed alpha
Helix 89	AJ8	Q	86	115	Right-handed alpha
Helix 90	AJ9	Q	121	132	Right-handed alpha
Helix 91	AK1	R	25	30	Right-handed 310
Helix 92	AK2	R	31	42	Right-handed alpha
Helix 93	AK3	R	50	77	Right-handed alpha
Helix 94	AK4	R	83	93	Right-handed alpha
Helix 95	AK5	S	17	23	Right-handed alpha
Helix 96	AK6	S	28	37	Right-handed alpha
Helix 97	AK7	S	47	74	Right-handed alpha
Helix 98	AK8	S	80	90	Right-handed alpha
Helix 99	AK9	S	91	98	Right-handed alpha
Helix 100	AL1	T	38	50	Right-handed alpha
Helix 101	AL2	T	56	85	Right-handed alpha
Helix 102	AL3	T	91	103	Right-handed alpha
Helix 103	AL4	T	105	125	Right-handed alpha

There are 28 sheets in PDB entry 6Y5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	G	102	103	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	F	97	99	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	225	233	anti-parallel
Strand 3	K	316	326	parallel
Strand 4	K	357	361	anti-parallel
Strand 5	K	375	378	anti-parallel
Strand 6	K	248	253	anti-parallel
Strand 7	K	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	225	233	anti-parallel
Strand 3	K	316	326	parallel
Strand 4	K	308	312	anti-parallel
Strand 5	K	296	298	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	266	267	first strand
Strand 2	K	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	364	366	first strand
Strand 2	K	369	371	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	206	208	first strand
Strand 2	L	225	233	anti-parallel
Strand 3	L	316	326	parallel
Strand 4	L	357	361	anti-parallel
Strand 5	L	375	378	anti-parallel
Strand 6	L	248	253	anti-parallel
Strand 7	L	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	206	208	first strand
Strand 2	L	225	233	anti-parallel
Strand 3	L	316	326	parallel
Strand 4	L	308	312	anti-parallel
Strand 5	L	296	298	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	266	267	first strand
Strand 2	L	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	364	365	first strand
Strand 2	L	370	371	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	84	85	first strand
Strand 2	N	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	120	first strand
Strand 2	N	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	98	99	first strand
Strand 2	S	102	103	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	43	44	first strand
Strand 2	P	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	78	79	first strand
Strand 2	P	54	55	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	102	103	first strand
Strand 2	R	98	99	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	84	85	first strand
Strand 2	R	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	119	120	first strand
Strand 2	R	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	43	44	first strand
Strand 2	T	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	78	79	first strand
Strand 2	T	54	55	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5D