Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5E entry

There are 11 chains in PDB entry 6Y5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 39	GLU 134
B	LEU 23	GLY 103
C	ARG 12	PRO 118
D	SER 33	ALA 125
E	PRO 39	GLU 134
F	LYS 21	GLY 103
G	ARG 12	LYS 119
H	ARG 32	ALA 125
I	A 1	T 153
J	A 1	T 153
K	GLY 161	PHE 522

There are 53 helices in PDB entry 6Y5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	B	25	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	93	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	28	37	Right-handed alpha
Helix 11	AB2	C	47	74	Right-handed alpha
Helix 12	AB3	C	80	90	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	C	113	117	Right-handed 310
Helix 15	AB6	D	38	50	Right-handed alpha
Helix 16	AB7	D	56	85	Right-handed alpha
Helix 17	AB8	D	91	103	Right-handed alpha
Helix 18	AB9	D	106	125	Right-handed alpha
Helix 19	AC1	E	45	58	Right-handed alpha
Helix 20	AC2	E	64	77	Right-handed alpha
Helix 21	AC3	E	86	115	Right-handed alpha
Helix 22	AC4	E	121	133	Right-handed alpha
Helix 23	AC5	F	26	30	Right-handed 310
Helix 24	AC6	F	31	42	Right-handed alpha
Helix 25	AC7	F	50	77	Right-handed alpha
Helix 26	AC8	F	83	93	Right-handed alpha
Helix 27	AC9	G	17	22	Right-handed alpha
Helix 28	AD1	G	28	35	Right-handed alpha
Helix 29	AD2	G	36	40	Right-handed 310
Helix 30	AD3	G	47	74	Right-handed alpha
Helix 31	AD4	G	80	91	Right-handed alpha
Helix 32	AD5	G	91	98	Right-handed alpha
Helix 33	AD6	G	113	117	Right-handed 310
Helix 34	AD7	H	38	50	Right-handed alpha
Helix 35	AD8	H	56	85	Right-handed alpha
Helix 36	AD9	H	91	103	Right-handed alpha
Helix 37	AE1	H	106	123	Right-handed alpha
Helix 38	AE2	K	162	175	Right-handed alpha
Helix 39	AE3	K	176	178	Right-handed 310
Helix 40	AE4	K	179	200	Right-handed alpha
Helix 41	AE5	K	260	264	Right-handed 310
Helix 42	AE6	K	272	289	Right-handed alpha
Helix 43	AE7	K	331	335	Right-handed 310
Helix 44	AE8	K	345	353	Right-handed alpha
Helix 45	AE9	K	379	388	Right-handed alpha
Helix 46	AF1	K	399	403	Right-handed 310
Helix 47	AF2	K	405	424	Right-handed alpha
Helix 48	AF3	K	434	449	Right-handed alpha
Helix 49	AF4	K	451	458	Right-handed 310
Helix 50	AF5	K	459	478	Right-handed alpha
Helix 51	AF6	K	497	513	Right-handed alpha
Helix 52	AF7	K	514	515	Right-handed 310
Helix 53	AF8	K	516	520	Right-handed 310

There are 14 sheets in PDB entry 6Y5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	G	102	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	F	97	99	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	46	47	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	225	233	anti-parallel
Strand 3	K	316	326	parallel
Strand 4	K	357	361	anti-parallel
Strand 5	K	375	378	anti-parallel
Strand 6	K	248	253	anti-parallel
Strand 7	K	237	241	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	225	233	anti-parallel
Strand 3	K	316	326	parallel
Strand 4	K	308	312	anti-parallel
Strand 5	K	296	298	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	266	267	first strand
Strand 2	K	270	271	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	364	366	first strand
Strand 2	K	369	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5E