Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y5F entry

There are 2 chains in PDB entry 6Y5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 22GLU 374
B
 ASP 662TRP 1092
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6Y5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 56Right-handed alpha
Helix 2
2
A
70 72Right-handed 310
Helix 3
3
A
152 156Right-handed 310
Helix 4
4
A
222 224Right-handed 310
Helix 5
5
A
226 233Right-handed alpha
Helix 6
6
A
267 278Right-handed alpha
Helix 7
7
A
288 290Right-handed 310
Helix 8
8
B
748 751Right-handed 310
Helix 9
9
B
855 857Right-handed 310
Helix 10
10
B
900 902Right-handed 310
Helix 11
11
B
915 925Right-handed alpha
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There are 14 sheets in PDB entry 6Y5F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 30first strand
Strand 2
A
168 176parallel
Strand 3
A
160 165anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
142 151anti-parallel
Strand 3
A
130 137anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 110first strand
Strand 2
A
75 85anti-parallel
Strand 3
A
339 341parallel
Strand 4
A
328 331anti-parallel
Strand 5
A
358 360anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
362 373anti-parallel
Strand 4
A
206 218anti-parallel
Strand 5
A
246 252anti-parallel
Strand 6
A
259 261anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
314 320anti-parallel
Strand 3
A
296 303anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
669 671first strand
Strand 2
B
688 695parallel
Strand 3
B
704 710anti-parallel
Strand 4
B
805 812anti-parallel
Strand 5
B
815 822anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
677 683first strand
Strand 2
B
951 958anti-parallel
Strand 3
B
832 838anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
940 944first strand
Strand 2
B
714 721anti-parallel
Strand 3
B
795 805anti-parallel
Strand 4
B
848 851anti-parallel
Strand 5
B
859 862anti-parallel
Strand 6
B
927 929anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 736first strand
Strand 2
B
781 788anti-parallel
Strand 3
B
754 760anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
879 881first strand
Strand 2
B
884 886anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
893 898first strand
Strand 2
B
904 909anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1028 1036first strand
Strand 2
B
991 1000anti-parallel
Strand 3
B
973 983anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1020 1026first strand
Strand 2
B
1004 1012anti-parallel
Strand 3
B
1046 1049anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
723 727first strand
Strand 2
B
791 796anti-parallel
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