Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5P entry

There are 2 chains in PDB entry 6Y5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 388	GLU 615
B	LYS 388	ALA 616

There are 10 helices in PDB entry 6Y5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	391	399	Right-handed alpha
Helix 2	AA2	A	426	430	Right-handed 310
Helix 3	AA3	A	450	459	Right-handed alpha
Helix 4	AA4	A	541	557	Right-handed alpha
Helix 5	AA5	A	599	611	Right-handed alpha
Helix 6	AA6	B	391	399	Right-handed alpha
Helix 7	AA7	B	426	430	Right-handed 310
Helix 8	AA8	B	450	459	Right-handed alpha
Helix 9	AA9	B	541	557	Right-handed alpha
Helix 10	AB1	B	599	611	Right-handed alpha

There are 10 sheets in PDB entry 6Y5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	438	441	anti-parallel
Strand 3	A	446	449	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	474	475	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	492	first strand
Strand 2	A	504	510	anti-parallel
Strand 3	A	534	539	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	526	527	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	564	first strand
Strand 2	A	574	577	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	402	first strand
Strand 2	B	438	441	anti-parallel
Strand 3	B	447	449	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	467	first strand
Strand 2	B	474	475	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	492	first strand
Strand 2	B	504	510	anti-parallel
Strand 3	B	534	539	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	515	first strand
Strand 2	B	526	527	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	564	first strand
Strand 2	B	574	577	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5P