Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5W entry

There are 2 chains in PDB entry 6Y5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 23	GLU 374
B	GLY 659	THR 1069

There are 13 helices in PDB entry 6Y5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed alpha
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	153	157	Right-handed 310
Helix 4	AA4	A	194	197	Right-handed 310
Helix 5	AA5	A	221	224	Right-handed 310
Helix 6	AA6	A	225	234	Right-handed alpha
Helix 7	AA7	A	266	279	Right-handed alpha
Helix 8	AA8	B	670	672	Right-handed 310
Helix 9	AA9	B	747	752	Right-handed 310
Helix 10	AB1	B	763	767	Right-handed 310
Helix 11	AB2	B	854	858	Right-handed 310
Helix 12	AB3	B	914	921	Right-handed alpha
Helix 13	AB4	B	922	926	Right-handed 310

There are 15 sheets in PDB entry 6Y5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	168	176	parallel
Strand 3	A	160	165	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	46	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	130	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	110	first strand
Strand 2	A	75	85	anti-parallel
Strand 3	A	339	341	parallel
Strand 4	A	328	331	anti-parallel
Strand 5	A	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	188	192	anti-parallel
Strand 3	A	362	373	anti-parallel
Strand 4	A	206	218	anti-parallel
Strand 5	A	246	252	anti-parallel
Strand 6	A	259	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	314	320	anti-parallel
Strand 3	A	296	303	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	694	first strand
Strand 2	B	704	710	anti-parallel
Strand 3	B	805	812	anti-parallel
Strand 4	B	815	822	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	940	943	first strand
Strand 2	B	714	721	anti-parallel
Strand 3	B	795	805	anti-parallel
Strand 4	B	848	851	anti-parallel
Strand 5	B	859	862	anti-parallel
Strand 6	B	927	929	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	736	first strand
Strand 2	B	781	788	anti-parallel
Strand 3	B	754	760	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	825	828	first strand
Strand 2	B	832	837	anti-parallel
Strand 3	B	951	959	anti-parallel
Strand 4	B	674	683	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	879	881	first strand
Strand 2	B	884	886	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	899	first strand
Strand 2	B	903	909	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1028	1036	first strand
Strand 2	B	991	1000	anti-parallel
Strand 3	B	973	983	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1048	first strand
Strand 2	B	1004	1012	anti-parallel
Strand 3	B	1017	1026	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	727	first strand
Strand 2	B	791	796	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5W