Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y5X entry

There are 10 chains in PDB entry 6Y5X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 48	ASN 322
B	THR 49	ASN 322
C	THR 49	LYS 321
D	GLU 38	ASN 322
E	ALA 48	LYS 321
F	GLU 38	LYS 321
G	VAL 37	ASN 322
H	ALA 48	LYS 321
I	ALA 48	LYS 321
J	ALA 48	LYS 321

There are 58 helices in PDB entry 6Y5X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	90	94	Right-handed 310
Helix 3	AA3	A	130	136	Right-handed 310
Helix 4	AA4	A	195	201	Right-handed alpha
Helix 5	AA5	A	203	212	Right-handed 310
Helix 6	AA6	A	278	280	Right-handed 310
Helix 7	AA7	B	67	73	Right-handed 310
Helix 8	AA8	B	90	94	Right-handed 310
Helix 9	AA9	B	130	136	Right-handed 310
Helix 10	AB1	B	195	201	Right-handed alpha
Helix 11	AB2	B	203	212	Right-handed 310
Helix 12	AB3	B	278	280	Right-handed 310
Helix 13	AB4	C	69	73	Right-handed 310
Helix 14	AB5	C	90	94	Right-handed 310
Helix 15	AB6	C	130	136	Right-handed 310
Helix 16	AB7	C	196	201	Right-handed alpha
Helix 17	AB8	C	203	212	Right-handed 310
Helix 18	AB9	C	278	280	Right-handed 310
Helix 19	AC1	D	69	73	Right-handed 310
Helix 20	AC2	D	90	94	Right-handed 310
Helix 21	AC3	D	130	136	Right-handed 310
Helix 22	AC4	D	196	201	Right-handed alpha
Helix 23	AC5	D	203	212	Right-handed 310
Helix 24	AC6	D	278	280	Right-handed 310
Helix 25	AC7	E	69	73	Right-handed 310
Helix 26	AC8	E	90	94	Right-handed 310
Helix 27	AC9	E	130	136	Right-handed 310
Helix 28	AD1	E	195	201	Right-handed alpha
Helix 29	AD2	E	203	212	Right-handed 310
Helix 30	AD3	F	69	73	Right-handed 310
Helix 31	AD4	F	90	94	Right-handed 310
Helix 32	AD5	F	130	136	Right-handed 310
Helix 33	AD6	F	195	201	Right-handed alpha
Helix 34	AD7	F	203	212	Right-handed 310
Helix 35	AD8	F	278	280	Right-handed 310
Helix 36	AD9	G	69	73	Right-handed 310
Helix 37	AE1	G	90	94	Right-handed 310
Helix 38	AE2	G	130	136	Right-handed 310
Helix 39	AE3	G	196	201	Right-handed alpha
Helix 40	AE4	G	203	212	Right-handed 310
Helix 41	AE5	H	69	73	Right-handed 310
Helix 42	AE6	H	90	94	Right-handed 310
Helix 43	AE7	H	130	136	Right-handed 310
Helix 44	AE8	H	195	201	Right-handed alpha
Helix 45	AE9	H	203	212	Right-handed 310
Helix 46	AF1	H	278	280	Right-handed 310
Helix 47	AF2	I	69	73	Right-handed 310
Helix 48	AF3	I	90	94	Right-handed 310
Helix 49	AF4	I	130	136	Right-handed 310
Helix 50	AF5	I	195	201	Right-handed alpha
Helix 51	AF6	I	203	212	Right-handed 310
Helix 52	AF7	I	278	280	Right-handed 310
Helix 53	AF8	J	69	73	Right-handed 310
Helix 54	AF9	J	90	94	Right-handed 310
Helix 55	AG1	J	130	136	Right-handed 310
Helix 56	AG2	J	196	201	Right-handed alpha
Helix 57	AG3	J	203	212	Right-handed 310
Helix 58	AG4	J	278	280	Right-handed 310

There are 44 sheets in PDB entry 6Y5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	309	321	anti-parallel
Strand 3	A	115	128	anti-parallel
Strand 4	A	266	267	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	282	295	anti-parallel
Strand 3	A	302	306	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	282	295	anti-parallel
Strand 3	A	161	168	anti-parallel
Strand 4	A	242	249	anti-parallel
Strand 5	E	257	261	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	173	176	anti-parallel
Strand 3	A	232	234	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	282	295	anti-parallel
Strand 5	B	98	103	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	282	295	anti-parallel
Strand 5	B	302	306	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	56	first strand
Strand 2	B	309	321	anti-parallel
Strand 3	B	115	128	anti-parallel
Strand 4	B	266	267	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	173	176	anti-parallel
Strand 3	B	232	234	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	C	242	249	anti-parallel
Strand 3	C	161	168	anti-parallel
Strand 4	C	282	295	anti-parallel
Strand 5	C	98	103	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	C	242	249	anti-parallel
Strand 3	C	161	168	anti-parallel
Strand 4	C	282	295	anti-parallel
Strand 5	C	302	306	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	56	first strand
Strand 2	C	309	320	anti-parallel
Strand 3	C	116	128	anti-parallel
Strand 4	C	266	267	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	232	234	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	D	242	249	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	282	295	anti-parallel
Strand 5	D	98	103	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	D	242	249	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	282	295	anti-parallel
Strand 5	D	302	306	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	309	321	anti-parallel
Strand 3	D	48	56	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	309	321	anti-parallel
Strand 3	D	115	128	anti-parallel
Strand 4	D	266	267	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	221	first strand
Strand 2	D	172	176	anti-parallel
Strand 3	D	232	234	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	E	242	249	anti-parallel
Strand 3	E	161	168	anti-parallel
Strand 4	E	282	295	anti-parallel
Strand 5	E	98	103	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	E	242	249	anti-parallel
Strand 3	E	161	168	anti-parallel
Strand 4	E	282	295	anti-parallel
Strand 5	E	302	306	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	56	first strand
Strand 2	E	309	320	anti-parallel
Strand 3	E	116	128	anti-parallel
Strand 4	E	266	267	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	56	first strand
Strand 2	E	309	320	anti-parallel
Strand 3	E	116	128	anti-parallel
Strand 4	E	277	278	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	220	first strand
Strand 2	E	173	176	anti-parallel
Strand 3	E	232	234	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	44	first strand
Strand 2	F	309	320	anti-parallel
Strand 3	F	48	56	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	44	first strand
Strand 2	F	309	320	anti-parallel
Strand 3	F	116	128	anti-parallel
Strand 4	F	266	267	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	282	295	anti-parallel
Strand 3	F	302	306	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	282	295	anti-parallel
Strand 3	F	161	168	anti-parallel
Strand 4	F	242	249	anti-parallel
Strand 5	J	257	261	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	221	first strand
Strand 2	F	172	176	anti-parallel
Strand 3	F	232	234	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	261	first strand
Strand 2	G	242	249	anti-parallel
Strand 3	G	161	168	anti-parallel
Strand 4	G	282	295	anti-parallel
Strand 5	G	98	103	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	261	first strand
Strand 2	G	242	249	anti-parallel
Strand 3	G	161	168	anti-parallel
Strand 4	G	282	295	anti-parallel
Strand 5	G	302	306	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	42	first strand
Strand 2	G	309	321	anti-parallel
Strand 3	G	115	128	anti-parallel
Strand 4	G	266	267	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	56	first strand
Strand 2	G	309	321	anti-parallel
Strand 3	G	115	128	anti-parallel
Strand 4	G	277	278	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	220	first strand
Strand 2	G	173	176	anti-parallel
Strand 3	G	232	234	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	257	261	first strand
Strand 2	H	242	249	anti-parallel
Strand 3	H	161	168	anti-parallel
Strand 4	H	282	295	anti-parallel
Strand 5	H	98	103	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	257	261	first strand
Strand 2	H	242	249	anti-parallel
Strand 3	H	161	168	anti-parallel
Strand 4	H	282	295	anti-parallel
Strand 5	H	302	306	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	56	first strand
Strand 2	H	309	320	anti-parallel
Strand 3	H	116	128	anti-parallel
Strand 4	H	266	267	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	220	first strand
Strand 2	H	173	176	anti-parallel
Strand 3	H	232	234	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	257	261	first strand
Strand 2	I	242	249	anti-parallel
Strand 3	I	161	168	anti-parallel
Strand 4	I	282	295	anti-parallel
Strand 5	I	98	103	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	257	261	first strand
Strand 2	I	242	249	anti-parallel
Strand 3	I	161	168	anti-parallel
Strand 4	I	282	295	anti-parallel
Strand 5	I	302	306	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	56	first strand
Strand 2	I	309	320	anti-parallel
Strand 3	I	116	128	anti-parallel
Strand 4	I	266	267	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	218	221	first strand
Strand 2	I	172	176	anti-parallel
Strand 3	I	232	234	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	261	first strand
Strand 2	J	242	249	anti-parallel
Strand 3	J	161	168	anti-parallel
Strand 4	J	282	295	anti-parallel
Strand 5	J	98	103	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	261	first strand
Strand 2	J	242	249	anti-parallel
Strand 3	J	161	168	anti-parallel
Strand 4	J	282	295	anti-parallel
Strand 5	J	302	306	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	56	first strand
Strand 2	J	309	320	anti-parallel
Strand 3	J	116	128	anti-parallel
Strand 4	J	266	267	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	218	221	first strand
Strand 2	J	172	176	anti-parallel
Strand 3	J	232	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y5X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5X