Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y62 entry

There are 2 chains in PDB entry 6Y62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	GLU 374
B	THR 653	GLY 1083

There are 14 helices in PDB entry 6Y62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	58	Right-handed 310
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	153	157	Right-handed 310
Helix 4	AA4	A	195	200	Right-handed alpha
Helix 5	AA5	A	201	205	Right-handed 310
Helix 6	AA6	A	225	234	Right-handed alpha
Helix 7	AA7	A	266	279	Right-handed alpha
Helix 8	AA8	A	288	292	Right-handed 310
Helix 9	AA9	B	747	752	Right-handed 310
Helix 10	AB1	B	763	767	Right-handed 310
Helix 11	AB2	B	854	858	Right-handed 310
Helix 12	AB3	B	914	921	Right-handed alpha
Helix 13	AB4	B	922	926	Right-handed 310
Helix 14	AB5	B	963	969	Right-handed alpha

There are 16 sheets in PDB entry 6Y62. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	30	first strand
Strand 2	A	168	176	parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	60	62	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	46	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	130	137	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	141	143	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	110	first strand
Strand 2	A	75	85	anti-parallel
Strand 3	A	338	341	parallel
Strand 4	A	328	331	anti-parallel
Strand 5	A	358	360	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	188	192	anti-parallel
Strand 3	A	362	373	anti-parallel
Strand 4	A	206	218	anti-parallel
Strand 5	A	246	252	anti-parallel
Strand 6	A	259	261	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	314	320	anti-parallel
Strand 3	A	296	303	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	669	672	first strand
Strand 2	B	688	696	parallel
Strand 3	B	703	710	anti-parallel
Strand 4	B	805	812	anti-parallel
Strand 5	B	815	822	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	676	683	first strand
Strand 2	B	951	958	anti-parallel
Strand 3	B	832	838	anti-parallel
Strand 4	B	825	828	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	690	first strand
Strand 2	B	1078	1081	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	940	943	first strand
Strand 2	B	713	721	anti-parallel
Strand 3	B	795	806	anti-parallel
Strand 4	B	848	851	anti-parallel
Strand 5	B	859	862	anti-parallel
Strand 6	B	927	929	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	736	first strand
Strand 2	B	781	788	anti-parallel
Strand 3	B	754	760	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	879	881	first strand
Strand 2	B	884	886	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	899	first strand
Strand 2	B	903	909	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1028	1036	first strand
Strand 2	B	991	1000	anti-parallel
Strand 3	B	973	983	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1048	first strand
Strand 2	B	1004	1012	anti-parallel
Strand 3	B	1017	1026	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	727	first strand
Strand 2	B	791	796	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y62

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y62