Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y6K entry

There is 1 chain in PDB entry 6Y6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 1612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6Y6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
73 75Right-handed 310
Helix 3
AA3
A
77 83Right-handed alpha
Helix 4
AA4
A
94 99Right-handed alpha
Helix 5
AA5
A
136 158Right-handed alpha
Helix 6
AA6
A
184 207Right-handed alpha
Helix 7
AA7
A
217 229Right-handed alpha
Helix 8
AA8
A
229 234Right-handed alpha
Helix 9
AA9
A
237 245Right-handed alpha
Helix 10
AB1
A
250 259Right-handed alpha
Helix 11
AB2
A
262 285Right-handed alpha
Helix 12
AB3
A
292 318Right-handed alpha
Helix 13
AB4
A
360 370Right-handed alpha
Helix 14
AB5
A
458 463Right-handed alpha
Helix 15
AB6
A
477 489Right-handed alpha
Helix 16
AB7
A
496 510Right-handed alpha
Helix 17
AB8
A
512 525Right-handed alpha
Helix 18
AB9
A
611 627Right-handed alpha
Helix 19
AC1
A
641 652Right-handed alpha
Helix 20
AC2
A
663 665Right-handed 310
Helix 21
AC3
A
666 671Right-handed alpha
Helix 22
AC4
A
682 687Right-handed 310
Helix 23
AC5
A
700 714Right-handed alpha
Helix 24
AC6
A
742 748Right-handed alpha
Helix 25
AC7
A
763 775Right-handed alpha
Helix 26
AC8
A
776 781Right-handed 310
Helix 27
AC9
A
802 807Right-handed alpha
Helix 28
AD1
A
812 821Right-handed alpha
Helix 29
AD2
A
825 839Right-handed alpha
Helix 30
AD3
A
874 877Right-handed 310
Helix 31
AD4
A
878 883Right-handed alpha
Helix 32
AD5
A
888 892Right-handed 310
Helix 33
AD6
A
893 902Right-handed alpha
Helix 34
AD7
A
926 945Right-handed alpha
Helix 35
AD8
A
956 961Right-handed alpha
Helix 36
AD9
A
964 972Right-handed alpha
Helix 37
AE1
A
1010 1018Right-handed alpha
Helix 38
AE2
A
1029 1038Right-handed alpha
Helix 39
AE3
A
1048 1056Right-handed alpha
Helix 40
AE4
A
1057 1059Right-handed 310
Helix 41
AE5
A
1085 1107Right-handed alpha
Helix 42
AE6
A
1143 1153Right-handed alpha
Helix 43
AE7
A
1155 1160Right-handed alpha
Helix 44
AE8
A
1161 1163Right-handed 310
Helix 45
AE9
A
1195 1201Right-handed alpha
Helix 46
AF1
A
1214 1219Right-handed alpha
Helix 47
AF2
A
1222 1228Right-handed alpha
Helix 48
AF3
A
1233 1238Right-handed alpha
Helix 49
AF4
A
1238 1248Right-handed alpha
Helix 50
AF5
A
1258 1266Right-handed alpha
Helix 51
AF6
A
1288 1296Right-handed alpha
Helix 52
AF7
A
1301 1306Right-handed alpha
Helix 53
AF8
A
1404 1411Right-handed alpha
Helix 54
AF9
A
1457 1465Right-handed alpha
Helix 55
AG1
A
1470 1479Right-handed alpha
Helix 56
AG2
A
1599 1604Right-handed alpha
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There are 13 sheets in PDB entry 6Y6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
164 168parallel
Strand 3
A
122 125parallel
Strand 4
A
113 116anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
170 172anti-parallel
Strand 4
A
128 129parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
66 71anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 545first strand
Strand 2
A
552 555anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 589first strand
Strand 2
A
594 595anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 721first strand
Strand 2
A
728 730anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
909 912first strand
Strand 2
A
921 924anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 979first strand
Strand 2
A
1130 1134anti-parallel
Strand 3
A
1117 1121anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
981 982first strand
Strand 2
A
1173 1175anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1024 1026first strand
Strand 2
A
1072 1074anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1179 1180first strand
Strand 2
A
1185 1187anti-parallel
Strand 3
A
1190 1192anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1487first strand
Strand 2
A
1610 1611anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1496 1500first strand
Strand 2
A
1581 1585anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il