Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y6P entry

There is 1 chain in PDB entry 6Y6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1PHE 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6Y6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed 310
Helix 2
AA2
A
50 53Right-handed 310
Helix 3
AA3
A
95 104Right-handed alpha
Helix 4
AA4
A
130 134Right-handed 310
Helix 5
AA5
A
202 212Right-handed alpha
Helix 6
AA6
A
217 221Right-handed 310
Helix 7
AA7
A
244 257Right-handed alpha
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There are 6 sheets in PDB entry 6Y6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
145 153parallel
Strand 3
A
137 142anti-parallel
Strand 4
A
41 42anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
118 128anti-parallel
Strand 3
A
107 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
118 128anti-parallel
Strand 3
A
20 26anti-parallel
Strand 4
A
233 234anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 87first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
317 319parallel
Strand 4
A
306 309anti-parallel
Strand 5
A
336 338anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
340 351anti-parallel
Strand 4
A
183 195anti-parallel
Strand 5
A
224 230anti-parallel
Strand 6
A
237 239anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 281first strand
Strand 2
A
292 299anti-parallel
Strand 3
A
323 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il