Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y6Q entry

There is 1 chain in PDB entry 6Y6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 659THR 1069
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6Y6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
671 673Right-handed 310
Helix 2
AA2
A
748 751Right-handed 310
Helix 3
AA3
A
855 857Right-handed 310
Helix 4
AA4
A
915 925Right-handed alpha
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There are 9 sheets in PDB entry 6Y6Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 683first strand
Strand 2
A
951 958anti-parallel
Strand 3
A
832 837anti-parallel
Strand 4
A
826 828anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 694first strand
Strand 2
A
704 710anti-parallel
Strand 3
A
805 812anti-parallel
Strand 4
A
815 822anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 943first strand
Strand 2
A
713 721anti-parallel
Strand 3
A
795 806anti-parallel
Strand 4
A
848 851anti-parallel
Strand 5
A
859 862anti-parallel
Strand 6
A
927 929anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 737first strand
Strand 2
A
780 788anti-parallel
Strand 3
A
754 761anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 881first strand
Strand 2
A
884 886anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
893 897first strand
Strand 2
A
905 909anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1028 1036first strand
Strand 2
A
991 1000anti-parallel
Strand 3
A
973 983anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1048first strand
Strand 2
A
1004 1012anti-parallel
Strand 3
A
1017 1026anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 727first strand
Strand 2
A
791 796anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il