Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y6U entry

There is 1 chain in PDB entry 6Y6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 48ASN 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6Y6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 90Right-handed alpha
Helix 2
AA2
A
91 94Right-handed 310
Helix 3
AA3
A
95 103Right-handed alpha
Helix 4
AA4
A
106 117Right-handed alpha
Helix 5
AA5
A
130 139Right-handed alpha
Helix 6
AA6
A
157 160Right-handed 310
Helix 7
AA7
A
161 166Right-handed alpha
Helix 8
AA8
A
176 182Right-handed alpha
Helix 9
AA9
A
182 188Right-handed alpha
Helix 10
AB1
A
224 242Right-handed alpha
Helix 11
AB2
A
277 282Right-handed 310
Helix 12
AB3
A
283 288Right-handed alpha
Helix 13
AB4
A
292 295Right-handed 310
Helix 14
AB5
A
296 307Right-handed alpha
Helix 15
AB6
A
342 348Right-handed alpha
Helix 16
AB7
A
350 362Right-handed alpha
Helix 17
AB8
A
362 373Right-handed alpha
Helix 18
AB9
A
398 408Right-handed alpha
Helix 19
AC1
A
414 427Right-handed alpha
Helix 20
AC2
A
450 467Right-handed alpha
Helix 21
AC3
A
471 475Right-handed 310
Helix 22
AC4
A
538 553Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6Y6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
A
191 198anti-parallel
Strand 3
A
203 211anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
145 154anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
65 66anti-parallel
Strand 4
A
219 220parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
246 253anti-parallel
Strand 3
A
518 525anti-parallel
Strand 4
A
504 511anti-parallel
Strand 5
A
482 487anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
339 341anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
328 331anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
446 447anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il