Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y71 entry

There are 2 chains in PDB entry 6Y71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 55	ALA 638
B	GLN 58	GLU 645

There are 26 helices in PDB entry 6Y71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	80	Right-handed 310
Helix 2	AA2	A	110	118	Right-handed alpha
Helix 3	AA3	A	119	123	Right-handed 310
Helix 4	AA4	A	263	268	Right-handed alpha
Helix 5	AA5	A	280	289	Right-handed alpha
Helix 6	AA6	A	354	360	Right-handed alpha
Helix 7	AA7	A	365	368	Right-handed 310
Helix 8	AA8	A	406	414	Right-handed alpha
Helix 9	AA9	A	502	504	Right-handed 310
Helix 10	AB1	A	514	516	Right-handed 310
Helix 11	AB2	A	517	527	Right-handed alpha
Helix 12	AB3	A	625	628	Right-handed 310
Helix 13	AB4	B	77	80	Right-handed 310
Helix 14	AB5	B	110	118	Right-handed alpha
Helix 15	AB6	B	119	123	Right-handed 310
Helix 16	AB7	B	263	268	Right-handed alpha
Helix 17	AB8	B	280	289	Right-handed alpha
Helix 18	AB9	B	354	360	Right-handed alpha
Helix 19	AC1	B	365	368	Right-handed 310
Helix 20	AC2	B	406	414	Right-handed alpha
Helix 21	AC3	B	456	460	Right-handed 310
Helix 22	AC4	B	502	504	Right-handed 310
Helix 23	AC5	B	514	516	Right-handed 310
Helix 24	AC6	B	517	527	Right-handed alpha
Helix 25	AC7	B	625	628	Right-handed 310
Helix 26	AC8	B	637	641	Right-handed 310

There are 22 sheets in PDB entry 6Y71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	96	first strand
Strand 2	A	82	87	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	496	500	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	154	159	anti-parallel
Strand 4	A	164	170	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	182	first strand
Strand 2	A	190	195	anti-parallel
Strand 3	A	215	223	anti-parallel
Strand 4	A	199	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	182	first strand
Strand 2	A	190	195	anti-parallel
Strand 3	A	215	223	anti-parallel
Strand 4	A	229	235	anti-parallel
Strand 5	A	302	304	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	250	255	anti-parallel
Strand 3	A	273	279	anti-parallel
Strand 4	A	316	321	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	336	340	anti-parallel
Strand 3	A	347	351	anti-parallel
Strand 4	A	370	372	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	385	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	400	405	anti-parallel
Strand 4	A	421	426	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	436	first strand
Strand 2	A	448	453	anti-parallel
Strand 3	A	469	475	anti-parallel
Strand 4	A	482	489	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	543	551	anti-parallel
Strand 3	A	554	555	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	543	551	anti-parallel
Strand 3	A	567	574	parallel
Strand 4	A	601	607	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	630	636	parallel
Strand 3	A	612	617	anti-parallel
Strand 4	A	583	587	anti-parallel
Strand 5	A	592	596	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	96	first strand
Strand 2	B	82	87	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	496	500	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	139	149	anti-parallel
Strand 3	B	154	159	anti-parallel
Strand 4	B	164	170	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	182	first strand
Strand 2	B	190	197	anti-parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	199	200	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	182	first strand
Strand 2	B	190	197	anti-parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	229	235	anti-parallel
Strand 5	B	302	304	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	250	255	anti-parallel
Strand 3	B	273	279	anti-parallel
Strand 4	B	316	321	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	347	351	anti-parallel
Strand 4	B	370	372	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	385	first strand
Strand 2	B	390	395	anti-parallel
Strand 3	B	400	405	anti-parallel
Strand 4	B	421	426	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	436	first strand
Strand 2	B	448	453	anti-parallel
Strand 3	B	469	475	anti-parallel
Strand 4	B	482	489	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	543	551	anti-parallel
Strand 3	B	554	555	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	543	551	anti-parallel
Strand 3	B	567	574	parallel
Strand 4	B	601	607	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	563	first strand
Strand 2	B	630	636	parallel
Strand 3	B	612	617	anti-parallel
Strand 4	B	583	587	anti-parallel
Strand 5	B	592	596	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y71

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y71