Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y73

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y73 entry

There are 8 chains in PDB entry 6Y73 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 8	SER 241
B	LYS 9	SER 241
C	LYS 9	SER 241
D	SER 5	PHE 240
E	LYS 9	SER 241
F	LYS 9	SER 241
G	LYS 9	SER 241
H	LYS 8	SER 241

There are103 helices in PDB entry 6Y73. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	22	28	Right-handed alpha
Helix 3	AA3	A	38	40	Right-handed 310
Helix 4	AA4	A	42	48	Right-handed alpha
Helix 5	AA5	A	67	70	Right-handed 310
Helix 6	AA6	A	78	80	Right-handed 310
Helix 7	AA7	A	99	110	Right-handed alpha
Helix 8	AA8	A	110	120	Right-handed alpha
Helix 9	AA9	A	154	175	Right-handed alpha
Helix 10	AB1	A	187	191	Right-handed 310
Helix 11	AB2	A	193	213	Right-handed alpha
Helix 12	AB3	A	214	216	Right-handed 310
Helix 13	AB4	A	225	241	Right-handed alpha
Helix 14	AB5	B	10	20	Right-handed alpha
Helix 15	AB6	B	22	28	Right-handed alpha
Helix 16	AB7	B	38	40	Right-handed 310
Helix 17	AB8	B	42	48	Right-handed alpha
Helix 18	AB9	B	67	70	Right-handed 310
Helix 19	AC1	B	78	80	Right-handed 310
Helix 20	AC2	B	99	110	Right-handed alpha
Helix 21	AC3	B	110	121	Right-handed alpha
Helix 22	AC4	B	154	175	Right-handed alpha
Helix 23	AC5	B	187	191	Right-handed 310
Helix 24	AC6	B	193	213	Right-handed alpha
Helix 25	AC7	B	214	216	Right-handed 310
Helix 26	AC8	B	225	241	Right-handed alpha
Helix 27	AC9	C	10	20	Right-handed alpha
Helix 28	AD1	C	22	28	Right-handed alpha
Helix 29	AD2	C	38	40	Right-handed 310
Helix 30	AD3	C	42	48	Right-handed alpha
Helix 31	AD4	C	67	70	Right-handed 310
Helix 32	AD5	C	78	80	Right-handed 310
Helix 33	AD6	C	99	110	Right-handed alpha
Helix 34	AD7	C	110	121	Right-handed alpha
Helix 35	AD8	C	154	175	Right-handed alpha
Helix 36	AD9	C	187	191	Right-handed 310
Helix 37	AE1	C	193	213	Right-handed alpha
Helix 38	AE2	C	214	216	Right-handed 310
Helix 39	AE3	C	225	240	Right-handed alpha
Helix 40	AE4	D	10	20	Right-handed alpha
Helix 41	AE5	D	22	28	Right-handed alpha
Helix 42	AE6	D	38	40	Right-handed 310
Helix 43	AE7	D	42	48	Right-handed alpha
Helix 44	AE8	D	67	70	Right-handed 310
Helix 45	AE9	D	78	80	Right-handed 310
Helix 46	AF1	D	99	110	Right-handed alpha
Helix 47	AF2	D	110	120	Right-handed alpha
Helix 48	AF3	D	154	175	Right-handed alpha
Helix 49	AF4	D	187	191	Right-handed 310
Helix 50	AF5	D	193	213	Right-handed alpha
Helix 51	AF6	D	214	216	Right-handed 310
Helix 52	AF7	D	225	240	Right-handed alpha
Helix 53	AF8	E	10	20	Right-handed alpha
Helix 54	AF9	E	22	28	Right-handed alpha
Helix 55	AG1	E	38	40	Right-handed 310
Helix 56	AG2	E	42	49	Right-handed alpha
Helix 57	AG3	E	78	80	Right-handed 310
Helix 58	AG4	E	99	110	Right-handed alpha
Helix 59	AG5	E	110	120	Right-handed alpha
Helix 60	AG6	E	154	175	Right-handed alpha
Helix 61	AG7	E	187	191	Right-handed 310
Helix 62	AG8	E	193	213	Right-handed alpha
Helix 63	AG9	E	214	216	Right-handed 310
Helix 64	AH1	E	225	241	Right-handed alpha
Helix 65	AH2	F	10	20	Right-handed alpha
Helix 66	AH3	F	22	28	Right-handed alpha
Helix 67	AH4	F	38	40	Right-handed 310
Helix 68	AH5	F	42	48	Right-handed alpha
Helix 69	AH6	F	67	70	Right-handed 310
Helix 70	AH7	F	78	80	Right-handed 310
Helix 71	AH8	F	99	110	Right-handed alpha
Helix 72	AH9	F	110	119	Right-handed alpha
Helix 73	AI1	F	154	175	Right-handed alpha
Helix 74	AI2	F	187	191	Right-handed 310
Helix 75	AI3	F	193	213	Right-handed alpha
Helix 76	AI4	F	214	216	Right-handed 310
Helix 77	AI5	F	225	241	Right-handed alpha
Helix 78	AI6	G	10	20	Right-handed alpha
Helix 79	AI7	G	22	28	Right-handed alpha
Helix 80	AI8	G	38	40	Right-handed 310
Helix 81	AI9	G	42	48	Right-handed alpha
Helix 82	AJ1	G	67	70	Right-handed 310
Helix 83	AJ2	G	78	80	Right-handed 310
Helix 84	AJ3	G	99	110	Right-handed alpha
Helix 85	AJ4	G	110	120	Right-handed alpha
Helix 86	AJ5	G	154	175	Right-handed alpha
Helix 87	AJ6	G	187	191	Right-handed 310
Helix 88	AJ7	G	193	213	Right-handed alpha
Helix 89	AJ8	G	214	216	Right-handed 310
Helix 90	AJ9	G	225	241	Right-handed alpha
Helix 91	AK1	H	10	20	Right-handed alpha
Helix 92	AK2	H	22	28	Right-handed alpha
Helix 93	AK3	H	38	40	Right-handed 310
Helix 94	AK4	H	42	48	Right-handed alpha
Helix 95	AK5	H	67	70	Right-handed 310
Helix 96	AK6	H	78	80	Right-handed 310
Helix 97	AK7	H	99	110	Right-handed alpha
Helix 98	AK8	H	110	119	Right-handed alpha
Helix 99	AK9	H	154	175	Right-handed alpha
Helix 100	AL1	H	187	191	Right-handed 310
Helix 101	AL2	H	193	213	Right-handed alpha
Helix 102	AL3	H	214	216	Right-handed 310
Helix 103	AL4	H	225	241	Right-handed alpha

There are 16 sheets in PDB entry 6Y73. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	82	83	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	218	222	parallel
Strand 3	A	179	182	parallel
Strand 4	A	86	91	parallel
Strand 5	A	140	145	parallel
Strand 6	A	128	132	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	82	83	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	218	223	parallel
Strand 3	B	179	182	parallel
Strand 4	B	86	91	parallel
Strand 5	B	140	145	parallel
Strand 6	B	128	132	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	82	83	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	76	first strand
Strand 2	C	218	223	parallel
Strand 3	C	179	182	parallel
Strand 4	C	86	91	parallel
Strand 5	C	140	145	parallel
Strand 6	C	128	132	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	82	83	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	76	first strand
Strand 2	D	218	223	parallel
Strand 3	D	179	182	parallel
Strand 4	D	86	91	parallel
Strand 5	D	140	145	parallel
Strand 6	D	128	132	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	82	83	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	75	first strand
Strand 2	E	218	222	parallel
Strand 3	E	179	182	parallel
Strand 4	E	86	91	parallel
Strand 5	E	140	145	parallel
Strand 6	E	128	132	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	82	83	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	76	first strand
Strand 2	F	218	223	parallel
Strand 3	F	179	182	parallel
Strand 4	F	86	91	parallel
Strand 5	F	140	145	parallel
Strand 6	F	128	132	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	36	first strand
Strand 2	G	82	83	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	75	first strand
Strand 2	G	218	222	parallel
Strand 3	G	179	182	parallel
Strand 4	G	86	91	parallel
Strand 5	G	140	145	parallel
Strand 6	G	128	132	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	36	first strand
Strand 2	H	82	83	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	75	first strand
Strand 2	H	218	222	parallel
Strand 3	H	179	182	parallel
Strand 4	H	86	91	parallel
Strand 5	H	140	145	parallel
Strand 6	H	128	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y73

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y73