Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y7B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y7B entry

There are 5 chains in PDB entry 6Y7B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ILE 295
B
 GLY 3ILE 295
C
 GLY 3ILE 295
D
 GLY 3ILE 295
E
 GLY 3ILE 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 6Y7B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed 310
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
80 95Right-handed alpha
Helix 4
AA4
A
106 119Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
142 153Right-handed alpha
Helix 7
AA7
A
156 163Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
171 176Right-handed alpha
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
192 194Right-handed 310
Helix 12
AB3
A
195 198Right-handed 310
Helix 13
AB4
A
199 209Right-handed alpha
Helix 14
AB5
A
215 231Right-handed alpha
Helix 15
AB6
A
248 259Right-handed alpha
Helix 16
AB7
A
273 278Right-handed alpha
Helix 17
AB8
A
278 292Right-handed alpha
Helix 18
AB9
B
44 49Right-handed 310
Helix 19
AC1
B
51 56Right-handed alpha
Helix 20
AC2
B
80 95Right-handed alpha
Helix 21
AC3
B
106 119Right-handed alpha
Helix 22
AC4
B
137 141Right-handed 310
Helix 23
AC5
B
142 144Right-handed 310
Helix 24
AC6
B
145 153Right-handed alpha
Helix 25
AC7
B
156 163Right-handed alpha
Helix 26
AC8
B
166 171Right-handed alpha
Helix 27
AC9
B
171 176Right-handed alpha
Helix 28
AD1
B
182 191Right-handed alpha
Helix 29
AD2
B
192 194Right-handed 310
Helix 30
AD3
B
195 198Right-handed 310
Helix 31
AD4
B
199 205Right-handed alpha
Helix 32
AD5
B
215 232Right-handed alpha
Helix 33
AD6
B
248 259Right-handed alpha
Helix 34
AD7
B
273 278Right-handed alpha
Helix 35
AD8
B
278 291Right-handed alpha
Helix 36
AD9
C
44 49Right-handed 310
Helix 37
AE1
C
51 56Right-handed alpha
Helix 38
AE2
C
80 95Right-handed alpha
Helix 39
AE3
C
106 119Right-handed alpha
Helix 40
AE4
C
137 141Right-handed 310
Helix 41
AE5
C
142 144Right-handed 310
Helix 42
AE6
C
145 153Right-handed alpha
Helix 43
AE7
C
156 163Right-handed alpha
Helix 44
AE8
C
166 171Right-handed alpha
Helix 45
AE9
C
171 176Right-handed alpha
Helix 46
AF1
C
182 191Right-handed alpha
Helix 47
AF2
C
192 194Right-handed 310
Helix 48
AF3
C
195 198Right-handed 310
Helix 49
AF4
C
199 205Right-handed alpha
Helix 50
AF5
C
215 232Right-handed alpha
Helix 51
AF6
C
248 259Right-handed alpha
Helix 52
AF7
C
273 278Right-handed alpha
Helix 53
AF8
C
278 292Right-handed alpha
Helix 54
AF9
D
44 49Right-handed 310
Helix 55
AG1
D
51 56Right-handed alpha
Helix 56
AG2
D
80 95Right-handed alpha
Helix 57
AG3
D
106 119Right-handed alpha
Helix 58
AG4
D
137 141Right-handed 310
Helix 59
AG5
D
142 144Right-handed 310
Helix 60
AG6
D
145 153Right-handed alpha
Helix 61
AG7
D
156 163Right-handed alpha
Helix 62
AG8
D
166 171Right-handed alpha
Helix 63
AG9
D
171 176Right-handed alpha
Helix 64
AH1
D
182 191Right-handed alpha
Helix 65
AH2
D
192 194Right-handed 310
Helix 66
AH3
D
195 198Right-handed 310
Helix 67
AH4
D
199 205Right-handed alpha
Helix 68
AH5
D
215 232Right-handed alpha
Helix 69
AH6
D
248 259Right-handed alpha
Helix 70
AH7
D
273 278Right-handed alpha
Helix 71
AH8
D
278 291Right-handed alpha
Helix 72
AH9
E
44 49Right-handed 310
Helix 73
AI1
E
51 56Right-handed alpha
Helix 74
AI2
E
80 95Right-handed alpha
Helix 75
AI3
E
106 119Right-handed alpha
Helix 76
AI4
E
137 141Right-handed 310
Helix 77
AI5
E
142 153Right-handed alpha
Helix 78
AI6
E
156 163Right-handed alpha
Helix 79
AI7
E
166 171Right-handed alpha
Helix 80
AI8
E
171 176Right-handed alpha
Helix 81
AI9
E
182 191Right-handed alpha
Helix 82
AJ1
E
192 194Right-handed 310
Helix 83
AJ2
E
195 199Right-handed 310
Helix 84
AJ3
E
200 205Right-handed alpha
Helix 85
AJ4
E
215 232Right-handed alpha
Helix 86
AJ5
E
248 259Right-handed alpha
Helix 87
AJ6
E
273 278Right-handed alpha
Helix 88
AJ7
E
278 291Right-handed alpha
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There are 5 sheets in PDB entry 6Y7B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
35 38parallel
Strand 5
A
100 105parallel
Strand 6
A
123 129parallel
Strand 7
A
236 243parallel
Strand 8
A
262 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
35 38parallel
Strand 5
B
100 105parallel
Strand 6
B
123 129parallel
Strand 7
B
236 243parallel
Strand 8
B
262 270parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
60 64anti-parallel
Strand 4
C
34 38parallel
Strand 5
C
100 105parallel
Strand 6
C
123 129parallel
Strand 7
C
236 243parallel
Strand 8
C
262 270parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 17first strand
Strand 2
D
20 27anti-parallel
Strand 3
D
60 64anti-parallel
Strand 4
D
34 38parallel
Strand 5
D
100 105parallel
Strand 6
D
123 129parallel
Strand 7
D
236 243parallel
Strand 8
D
262 270parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 17first strand
Strand 2
E
20 27anti-parallel
Strand 3
E
60 64anti-parallel
Strand 4
E
34 38parallel
Strand 5
E
100 105parallel
Strand 6
E
123 129parallel
Strand 7
E
236 243parallel
Strand 8
E
262 270parallel
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