Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y7F entry

There are 2 chains in PDB entry 6Y7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 16LYS 269
B
 TYR 14LYS 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6Y7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed 310
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
34 50Right-handed alpha
Helix 4
AA4
A
50 57Right-handed alpha
Helix 5
AA5
A
64 89Right-handed alpha
Helix 6
AA6
A
107 127Right-handed alpha
Helix 7
AA7
A
128 137Right-handed alpha
Helix 8
AA8
A
139 143Right-handed 310
Helix 9
AA9
A
144 165Right-handed alpha
Helix 10
AB1
A
167 170Right-handed 310
Helix 11
AB2
A
171 193Right-handed alpha
Helix 12
AB3
A
194 199Right-handed alpha
Helix 13
AB4
A
203 228Right-handed alpha
Helix 14
AB5
A
236 261Right-handed alpha
Helix 15
AB6
B
16 21Right-handed 310
Helix 16
AB7
B
22 26Right-handed 310
Helix 17
AB8
B
34 50Right-handed alpha
Helix 18
AB9
B
50 57Right-handed alpha
Helix 19
AC1
B
64 89Right-handed alpha
Helix 20
AC2
B
107 127Right-handed alpha
Helix 21
AC3
B
128 137Right-handed alpha
Helix 22
AC4
B
139 143Right-handed 310
Helix 23
AC5
B
144 165Right-handed alpha
Helix 24
AC6
B
167 170Right-handed 310
Helix 25
AC7
B
171 193Right-handed alpha
Helix 26
AC8
B
194 199Right-handed alpha
Helix 27
AC9
B
203 228Right-handed alpha
Helix 28
AD1
B
236 261Right-handed alpha
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There are no sheets in PDB entry 6Y7F
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il