Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y7O entry

There are 3 chains in PDB entry 6Y7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	THR 320
B	SER 3	THR 320
C	SER 3	THR 320

There are no helices in PDB entry 6Y7O

There are 24 sheets in PDB entry 6Y7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	313	317	anti-parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	294	299	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	33	37	anti-parallel
Strand 4	A	43	47	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	73	77	anti-parallel
Strand 4	A	83	87	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	123	127	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	139	first strand
Strand 2	A	143	148	anti-parallel
Strand 3	A	153	157	anti-parallel
Strand 4	A	163	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	180	first strand
Strand 2	A	183	188	anti-parallel
Strand 3	A	193	197	anti-parallel
Strand 4	A	203	207	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	219	first strand
Strand 2	A	223	228	anti-parallel
Strand 3	A	233	237	anti-parallel
Strand 4	A	243	247	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	260	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	273	277	anti-parallel
Strand 4	A	283	287	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	313	317	anti-parallel
Strand 3	B	303	308	anti-parallel
Strand 4	B	294	299	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	33	37	anti-parallel
Strand 4	B	43	47	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	73	77	anti-parallel
Strand 4	B	83	87	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	100	first strand
Strand 2	B	103	108	anti-parallel
Strand 3	B	113	117	anti-parallel
Strand 4	B	123	127	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	139	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	153	157	anti-parallel
Strand 4	B	163	167	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	180	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	193	197	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	219	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	233	237	anti-parallel
Strand 4	B	243	247	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	259	first strand
Strand 2	B	264	268	anti-parallel
Strand 3	B	273	276	anti-parallel
Strand 4	B	283	287	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	313	317	anti-parallel
Strand 3	C	303	308	anti-parallel
Strand 4	C	294	299	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	20	first strand
Strand 2	C	23	28	anti-parallel
Strand 3	C	33	37	anti-parallel
Strand 4	C	43	47	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	59	first strand
Strand 2	C	63	68	anti-parallel
Strand 3	C	73	77	anti-parallel
Strand 4	C	83	87	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	100	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	113	117	anti-parallel
Strand 4	C	123	127	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	139	first strand
Strand 2	C	144	148	anti-parallel
Strand 3	C	153	155	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	180	first strand
Strand 2	C	183	188	anti-parallel
Strand 3	C	193	197	anti-parallel
Strand 4	C	202	207	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	219	first strand
Strand 2	C	223	228	anti-parallel
Strand 3	C	233	237	anti-parallel
Strand 4	C	243	247	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	259	first strand
Strand 2	C	263	268	anti-parallel
Strand 3	C	273	277	anti-parallel
Strand 4	C	283	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y7O