Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y83 entry

There are 2 chains in PDB entry 6Y83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 15	THR 635
B	CYS 19	GLY 642

There are 37 helices in PDB entry 6Y83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	89	98	Right-handed alpha
Helix 3	AA3	A	101	107	Right-handed alpha
Helix 4	AA4	A	118	135	Right-handed alpha
Helix 5	AA5	A	139	145	Right-handed alpha
Helix 6	AA6	A	159	163	Right-handed 310
Helix 7	AA7	A	173	180	Right-handed alpha
Helix 8	AA8	A	180	194	Right-handed alpha
Helix 9	AA9	A	218	240	Right-handed alpha
Helix 10	AB1	A	242	255	Right-handed alpha
Helix 11	AB2	A	268	277	Right-handed alpha
Helix 12	AB3	A	306	328	Right-handed alpha
Helix 13	AB4	A	354	380	Right-handed alpha
Helix 14	AB5	A	389	402	Right-handed alpha
Helix 15	AB6	A	436	441	Right-handed alpha
Helix 16	AB7	A	479	483	Right-handed 310
Helix 17	AB8	A	484	491	Right-handed alpha
Helix 18	AB9	A	589	594	Right-handed alpha
Helix 19	AC1	A	610	615	Right-handed alpha
Helix 20	AC2	A	624	632	Right-handed alpha
Helix 21	AC3	B	89	103	Right-handed alpha
Helix 22	AC4	B	106	111	Right-handed 310
Helix 23	AC5	B	118	135	Right-handed alpha
Helix 24	AC6	B	139	144	Right-handed alpha
Helix 25	AC7	B	173	180	Right-handed alpha
Helix 26	AC8	B	180	194	Right-handed alpha
Helix 27	AC9	B	218	241	Right-handed alpha
Helix 28	AD1	B	242	257	Right-handed alpha
Helix 29	AD2	B	268	276	Right-handed alpha
Helix 30	AD3	B	306	328	Right-handed alpha
Helix 31	AD4	B	354	381	Right-handed alpha
Helix 32	AD5	B	388	403	Right-handed alpha
Helix 33	AD6	B	484	492	Right-handed alpha
Helix 34	AD7	B	542	546	Right-handed 310
Helix 35	AD8	B	589	595	Right-handed alpha
Helix 36	AD9	B	624	636	Right-handed alpha
Helix 37	AE1	B	637	642	Right-handed 310

There are 11 sheets in PDB entry 6Y83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	55	66	anti-parallel
Strand 3	A	38	48	anti-parallel
Strand 4	A	597	608	anti-parallel
Strand 5	A	453	455	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	198	200	parallel
Strand 3	A	170	171	parallel
Strand 4	A	284	285	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	334	first strand
Strand 2	A	337	340	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	415	416	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	466	first strand
Strand 2	A	471	475	anti-parallel
Strand 3	A	567	571	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	582	584	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	55	66	anti-parallel
Strand 3	B	38	48	anti-parallel
Strand 4	B	597	607	anti-parallel
Strand 5	B	453	455	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	283	285	anti-parallel
Strand 3	B	170	172	parallel
Strand 4	B	199	200	parallel
Strand 5	B	154	155	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	338	340	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	415	416	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	467	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	567	571	anti-parallel
Strand 4	B	501	503	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y83

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y83