Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y87 entry

There are 6 chains in PDB entry 6Y87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 0	LEU 469
B	SER 4	LEU 469
C	ASN 6	LEU 469
D	ILE 5	LEU 469
E	SER 4	LEU 469
F	SER 4	LEU 469

There are125 helices in PDB entry 6Y87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	31	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	48	57	Right-handed alpha
Helix 4	AA4	A	69	74	Right-handed alpha
Helix 5	AA5	A	92	104	Right-handed alpha
Helix 6	AA6	A	125	129	Right-handed 310
Helix 7	AA7	A	130	146	Right-handed alpha
Helix 8	AA8	A	160	178	Right-handed alpha
Helix 9	AA9	A	186	198	Right-handed alpha
Helix 10	AB1	A	226	236	Right-handed alpha
Helix 11	AB2	A	292	302	Right-handed alpha
Helix 12	AB3	A	322	335	Right-handed alpha
Helix 13	AB4	A	347	349	Right-handed 310
Helix 14	AB5	A	378	385	Right-handed alpha
Helix 15	AB6	A	389	409	Right-handed alpha
Helix 16	AB7	A	416	420	Right-handed 310
Helix 17	AB8	A	421	428	Right-handed alpha
Helix 18	AB9	A	429	433	Right-handed 310
Helix 19	AC1	A	459	462	Right-handed 310
Helix 20	AC2	A	463	468	Right-handed alpha
Helix 21	AC3	B	17	31	Right-handed alpha
Helix 22	AC4	B	32	36	Right-handed 310
Helix 23	AC5	B	48	57	Right-handed alpha
Helix 24	AC6	B	69	75	Right-handed alpha
Helix 25	AC7	B	76	78	Right-handed 310
Helix 26	AC8	B	92	103	Right-handed alpha
Helix 27	AC9	B	125	129	Right-handed 310
Helix 28	AD1	B	130	146	Right-handed alpha
Helix 29	AD2	B	160	178	Right-handed alpha
Helix 30	AD3	B	186	197	Right-handed alpha
Helix 31	AD4	B	226	236	Right-handed alpha
Helix 32	AD5	B	292	302	Right-handed alpha
Helix 33	AD6	B	322	335	Right-handed alpha
Helix 34	AD7	B	347	349	Right-handed 310
Helix 35	AD8	B	378	385	Right-handed alpha
Helix 36	AD9	B	389	409	Right-handed alpha
Helix 37	AE1	B	416	420	Right-handed 310
Helix 38	AE2	B	421	428	Right-handed alpha
Helix 39	AE3	B	429	434	Right-handed 310
Helix 40	AE4	B	459	462	Right-handed 310
Helix 41	AE5	B	463	468	Right-handed alpha
Helix 42	AE6	C	17	29	Right-handed alpha
Helix 43	AE7	C	32	36	Right-handed 310
Helix 44	AE8	C	48	57	Right-handed alpha
Helix 45	AE9	C	69	75	Right-handed alpha
Helix 46	AF1	C	76	78	Right-handed 310
Helix 47	AF2	C	92	104	Right-handed alpha
Helix 48	AF3	C	125	129	Right-handed 310
Helix 49	AF4	C	130	146	Right-handed alpha
Helix 50	AF5	C	160	177	Right-handed alpha
Helix 51	AF6	C	186	198	Right-handed alpha
Helix 52	AF7	C	226	236	Right-handed alpha
Helix 53	AF8	C	292	302	Right-handed alpha
Helix 54	AF9	C	322	335	Right-handed alpha
Helix 55	AG1	C	347	349	Right-handed 310
Helix 56	AG2	C	378	383	Right-handed alpha
Helix 57	AG3	C	389	409	Right-handed alpha
Helix 58	AG4	C	416	420	Right-handed 310
Helix 59	AG5	C	421	428	Right-handed alpha
Helix 60	AG6	C	429	433	Right-handed 310
Helix 61	AG7	C	459	462	Right-handed 310
Helix 62	AG8	C	463	468	Right-handed alpha
Helix 63	AG9	D	17	31	Right-handed alpha
Helix 64	AH1	D	32	36	Right-handed 310
Helix 65	AH2	D	48	57	Right-handed alpha
Helix 66	AH3	D	69	75	Right-handed alpha
Helix 67	AH4	D	76	78	Right-handed 310
Helix 68	AH5	D	92	104	Right-handed alpha
Helix 69	AH6	D	125	129	Right-handed 310
Helix 70	AH7	D	130	146	Right-handed alpha
Helix 71	AH8	D	160	179	Right-handed alpha
Helix 72	AH9	D	186	197	Right-handed alpha
Helix 73	AI1	D	226	236	Right-handed alpha
Helix 74	AI2	D	292	302	Right-handed alpha
Helix 75	AI3	D	322	335	Right-handed alpha
Helix 76	AI4	D	347	349	Right-handed 310
Helix 77	AI5	D	378	385	Right-handed alpha
Helix 78	AI6	D	389	409	Right-handed alpha
Helix 79	AI7	D	416	420	Right-handed 310
Helix 80	AI8	D	421	430	Right-handed alpha
Helix 81	AI9	D	431	433	Right-handed 310
Helix 82	AJ1	D	459	462	Right-handed 310
Helix 83	AJ2	D	463	468	Right-handed alpha
Helix 84	AJ3	E	17	31	Right-handed alpha
Helix 85	AJ4	E	32	36	Right-handed 310
Helix 86	AJ5	E	48	57	Right-handed alpha
Helix 87	AJ6	E	69	75	Right-handed alpha
Helix 88	AJ7	E	76	78	Right-handed 310
Helix 89	AJ8	E	92	104	Right-handed alpha
Helix 90	AJ9	E	125	129	Right-handed 310
Helix 91	AK1	E	130	146	Right-handed alpha
Helix 92	AK2	E	160	179	Right-handed alpha
Helix 93	AK3	E	186	198	Right-handed alpha
Helix 94	AK4	E	226	236	Right-handed alpha
Helix 95	AK5	E	292	302	Right-handed alpha
Helix 96	AK6	E	322	335	Right-handed alpha
Helix 97	AK7	E	347	349	Right-handed 310
Helix 98	AK8	E	378	385	Right-handed alpha
Helix 99	AK9	E	389	409	Right-handed alpha
Helix 100	AL1	E	416	420	Right-handed 310
Helix 101	AL2	E	421	430	Right-handed alpha
Helix 102	AL3	E	431	433	Right-handed 310
Helix 103	AL4	E	459	462	Right-handed 310
Helix 104	AL5	E	463	468	Right-handed alpha
Helix 105	AL6	F	17	31	Right-handed alpha
Helix 106	AL7	F	32	36	Right-handed 310
Helix 107	AL8	F	48	57	Right-handed alpha
Helix 108	AL9	F	69	75	Right-handed alpha
Helix 109	AM1	F	76	78	Right-handed 310
Helix 110	AM2	F	92	104	Right-handed alpha
Helix 111	AM3	F	125	129	Right-handed 310
Helix 112	AM4	F	130	146	Right-handed alpha
Helix 113	AM5	F	160	178	Right-handed alpha
Helix 114	AM6	F	186	197	Right-handed alpha
Helix 115	AM7	F	226	236	Right-handed alpha
Helix 116	AM8	F	292	302	Right-handed alpha
Helix 117	AM9	F	322	335	Right-handed alpha
Helix 118	AN1	F	347	349	Right-handed 310
Helix 119	AN2	F	378	385	Right-handed alpha
Helix 120	AN3	F	389	409	Right-handed alpha
Helix 121	AN4	F	416	420	Right-handed 310
Helix 122	AN5	F	421	430	Right-handed alpha
Helix 123	AN6	F	431	433	Right-handed 310
Helix 124	AN7	F	459	462	Right-handed 310
Helix 125	AN8	F	463	468	Right-handed alpha

There are 42 sheets in PDB entry 6Y87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	37	41	parallel
Strand 3	A	10	14	parallel
Strand 4	A	82	86	parallel
Strand 5	A	106	109	parallel
Strand 6	A	151	152	parallel
Strand 7	A	414	415	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	320	first strand
Strand 2	A	201	208	parallel
Strand 3	A	355	365	anti-parallel
Strand 4	A	368	377	anti-parallel
Strand 5	A	436	441	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	351	353	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	342	345	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	263	269	anti-parallel
Strand 3	A	253	256	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	279	first strand
Strand 2	A	283	288	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	310	311	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	37	41	parallel
Strand 3	B	10	14	parallel
Strand 4	B	82	86	parallel
Strand 5	B	106	109	parallel
Strand 6	B	151	152	parallel
Strand 7	B	414	415	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	320	first strand
Strand 2	B	201	208	parallel
Strand 3	B	355	365	anti-parallel
Strand 4	B	368	377	anti-parallel
Strand 5	B	435	441	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	351	353	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	342	345	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	263	269	anti-parallel
Strand 3	B	253	256	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	279	first strand
Strand 2	B	283	288	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	310	311	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	37	41	parallel
Strand 3	C	10	14	parallel
Strand 4	C	82	86	parallel
Strand 5	C	106	109	parallel
Strand 6	C	151	152	parallel
Strand 7	C	414	415	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	320	first strand
Strand 2	C	201	208	parallel
Strand 3	C	355	365	anti-parallel
Strand 4	C	368	377	anti-parallel
Strand 5	C	435	441	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	351	353	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	342	345	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	263	269	anti-parallel
Strand 3	C	253	256	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	279	first strand
Strand 2	C	283	288	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	310	311	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	37	41	parallel
Strand 3	D	10	14	parallel
Strand 4	D	82	86	parallel
Strand 5	D	106	109	parallel
Strand 6	D	151	152	parallel
Strand 7	D	414	415	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	320	first strand
Strand 2	D	201	208	parallel
Strand 3	D	355	365	anti-parallel
Strand 4	D	368	377	anti-parallel
Strand 5	D	436	441	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	351	353	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	342	345	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	263	269	anti-parallel
Strand 3	D	253	256	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	279	first strand
Strand 2	D	283	288	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	310	311	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	61	first strand
Strand 2	E	37	41	parallel
Strand 3	E	10	14	parallel
Strand 4	E	82	86	parallel
Strand 5	E	106	109	parallel
Strand 6	E	151	152	parallel
Strand 7	E	414	415	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	320	first strand
Strand 2	E	201	208	parallel
Strand 3	E	355	365	anti-parallel
Strand 4	E	368	377	anti-parallel
Strand 5	E	436	441	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	212	first strand
Strand 2	E	351	353	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	223	first strand
Strand 2	E	342	345	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	241	first strand
Strand 2	E	263	269	anti-parallel
Strand 3	E	253	256	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	279	first strand
Strand 2	E	283	288	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	310	311	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	37	41	parallel
Strand 3	F	10	14	parallel
Strand 4	F	82	86	parallel
Strand 5	F	106	109	parallel
Strand 6	F	151	152	parallel
Strand 7	F	414	415	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	320	first strand
Strand 2	F	201	208	parallel
Strand 3	F	355	365	anti-parallel
Strand 4	F	368	377	anti-parallel
Strand 5	F	436	441	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	212	first strand
Strand 2	F	351	353	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	223	first strand
Strand 2	F	342	345	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	241	first strand
Strand 2	F	263	269	anti-parallel
Strand 3	F	253	256	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	279	first strand
Strand 2	F	283	288	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	305	first strand
Strand 2	F	310	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y87

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y87