Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y8Q entry

There are 4 chains in PDB entry 6Y8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ILE 195
B	SER 2	ILE 196
C	SER 1	ILE 195
D	SER 1	ILE 195

There are 44 helices in PDB entry 6Y8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	13	Right-handed alpha
Helix 2	AA2	A	19	25	Right-handed alpha
Helix 3	AA3	A	29	38	Right-handed alpha
Helix 4	AA4	A	57	66	Right-handed alpha
Helix 5	AA5	A	72	80	Right-handed alpha
Helix 6	AA6	A	113	117	Right-handed 310
Helix 7	AA7	A	136	147	Right-handed alpha
Helix 8	AA8	A	148	151	Right-handed 310
Helix 9	AA9	A	152	166	Right-handed alpha
Helix 10	AB1	A	170	181	Right-handed alpha
Helix 11	AB2	A	183	193	Right-handed alpha
Helix 12	AB3	B	3	14	Right-handed alpha
Helix 13	AB4	B	20	26	Right-handed alpha
Helix 14	AB5	B	30	39	Right-handed alpha
Helix 15	AB6	B	58	67	Right-handed alpha
Helix 16	AB7	B	73	81	Right-handed alpha
Helix 17	AB8	B	114	118	Right-handed 310
Helix 18	AB9	B	137	148	Right-handed alpha
Helix 19	AC1	B	149	152	Right-handed 310
Helix 20	AC2	B	153	166	Right-handed alpha
Helix 21	AC3	B	171	182	Right-handed alpha
Helix 22	AC4	B	184	196	Right-handed alpha
Helix 23	AC5	C	2	13	Right-handed alpha
Helix 24	AC6	C	19	25	Right-handed alpha
Helix 25	AC7	C	29	38	Right-handed alpha
Helix 26	AC8	C	57	66	Right-handed alpha
Helix 27	AC9	C	72	80	Right-handed alpha
Helix 28	AD1	C	113	117	Right-handed 310
Helix 29	AD2	C	136	147	Right-handed alpha
Helix 30	AD3	C	148	151	Right-handed 310
Helix 31	AD4	C	152	165	Right-handed alpha
Helix 32	AD5	C	170	181	Right-handed alpha
Helix 33	AD6	C	183	192	Right-handed alpha
Helix 34	AD7	D	2	13	Right-handed alpha
Helix 35	AD8	D	19	25	Right-handed alpha
Helix 36	AD9	D	29	38	Right-handed alpha
Helix 37	AE1	D	57	66	Right-handed alpha
Helix 38	AE2	D	72	80	Right-handed alpha
Helix 39	AE3	D	113	118	Right-handed alpha
Helix 40	AE4	D	136	147	Right-handed alpha
Helix 41	AE5	D	148	151	Right-handed 310
Helix 42	AE6	D	152	165	Right-handed alpha
Helix 43	AE7	D	170	181	Right-handed alpha
Helix 44	AE8	D	183	192	Right-handed alpha

There are 12 sheets in PDB entry 6Y8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	48	50	anti-parallel
Strand 3	A	42	45	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	107	112	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	131	135	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	49	51	anti-parallel
Strand 3	B	43	46	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	108	113	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	132	136	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	48	50	anti-parallel
Strand 3	C	42	45	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	90	95	anti-parallel
Strand 3	C	107	112	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	125	first strand
Strand 2	C	131	135	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	48	50	anti-parallel
Strand 3	D	42	45	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	108	111	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	131	135	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y8Q