Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y8Y entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6Y8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5ALA 120
A
 ARG 122THR 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6Y8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 36Right-handed alpha
Helix 2
AA2
A
38 50Right-handed alpha
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
70 85Right-handed alpha
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
144 156Right-handed alpha
Helix 7
AA7
A
196 207Right-handed alpha
Helix 8
AA8
A
208 217Right-handed alpha
Helix 9
AA9
A
233 241Right-handed alpha
Helix 10
AB1
A
248 250Right-handed 310
Helix 11
AB2
A
260 264Right-handed 310
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
304 306Right-handed 310
Helix 14
AB5
A
309 320Right-handed alpha
Helix 15
AB6
A
321 323Right-handed 310
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
343 353Right-handed alpha
Helix 18
AB9
A
363 372Right-handed alpha
Helix 19
AC1
A
394 410Right-handed alpha
Helix 20
AC2
A
412 425Right-handed alpha
Helix 21
AC3
A
438 455Right-handed alpha
Helix 22
AC4
A
457 460Right-handed 310
Helix 23
AC5
A
529 533Right-handed 310
Helix 24
AC6
A
536 541Right-handed alpha
Helix 25
AC7
A
541 553Right-handed alpha
Helix 26
AC8
A
553 559Right-handed alpha
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There are 6 sheets in PDB entry 6Y8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
160 163anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
60 65parallel
Strand 5
A
89 97parallel
Strand 6
A
188 193parallel
Strand 7
A
175 179anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
224 227parallel
Strand 3
A
287 291parallel
Strand 4
A
298 302anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
335 338parallel
Strand 3
A
377 380parallel
Strand 4
A
384 387anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
468 477anti-parallel
Strand 3
A
494 498anti-parallel
Strand 4
A
502 508anti-parallel
Strand 5
A
517 527anti-parallel
Strand 6
A
426 437anti-parallel
Strand 7
A
565 567anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
488 489anti-parallel
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