Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y92

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y92 entry

There are 6 chains in PDB entry 6Y92 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 41	ARG 218
D	GLU 1	ARG 211
C	GLU 1	PRO 222
H	GLU 1	PRO 222
L	GLU 1	ARG 211
B	THR 41	ARG 218

There are 19 helices in PDB entry 6Y92. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	70	Right-handed alpha
Helix 2	AA2	A	79	85	Right-handed alpha
Helix 3	AA3	A	85	101	Right-handed alpha
Helix 4	AA4	A	115	140	Right-handed alpha
Helix 5	AA5	A	152	157	Right-handed alpha
Helix 6	AA6	A	177	182	Right-handed alpha
Helix 7	AA7	A	183	216	Right-handed alpha
Helix 8	AA8	D	121	128	Right-handed alpha
Helix 9	AA9	D	182	188	Right-handed alpha
Helix 10	AB1	C	165	167	Right-handed 310
Helix 11	AB2	H	165	167	Right-handed 310
Helix 12	AB3	L	121	128	Right-handed alpha
Helix 13	AB4	L	182	188	Right-handed alpha
Helix 14	AB5	B	49	70	Right-handed alpha
Helix 15	AB6	B	79	84	Right-handed alpha
Helix 16	AB7	B	85	101	Right-handed alpha
Helix 17	AB8	B	114	140	Right-handed alpha
Helix 18	AB9	B	152	157	Right-handed alpha
Helix 19	AC1	B	177	216	Right-handed alpha

There are 20 sheets in PDB entry 6Y92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	23	25	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	70	74	anti-parallel
Strand 3	D	63	67	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	49	first strand
Strand 2	D	34	38	anti-parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	139	first strand
Strand 2	D	173	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	192	197	anti-parallel
Strand 4	D	205	208	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	71	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	97	99	anti-parallel
Strand 5	C	109	112	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	116	117	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	144	152	anti-parallel
Strand 3	C	186	194	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	204	208	anti-parallel
Strand 3	C	216	219	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	21	23	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	45	50	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	97	99	anti-parallel
Strand 5	H	109	112	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	94	first strand
Strand 2	H	116	117	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	186	194	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	204	208	anti-parallel
Strand 3	H	216	219	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	23	25	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	70	74	anti-parallel
Strand 3	L	63	67	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	49	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	139	first strand
Strand 2	L	173	181	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	205	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y92

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y92