Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y97 entry

There are 4 chains in PDB entry 6Y97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 45GLU 213
B
 PHE 45GLU 213
H
 VAL 2VAL 117
L
 ASP 1GLU 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6Y97. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 70Right-handed alpha
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
85 100Right-handed alpha
Helix 4
AA4
A
109 143Right-handed alpha
Helix 5
AA5
A
152 156Right-handed 310
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
177 213Right-handed alpha
Helix 8
AA8
B
45 51Right-handed 310
Helix 9
AA9
B
52 71Right-handed alpha
Helix 10
AB1
B
79 84Right-handed alpha
Helix 11
AB2
B
85 102Right-handed alpha
Helix 12
AB3
B
112 143Right-handed alpha
Helix 13
AB4
B
152 157Right-handed alpha
Helix 14
AB5
B
171 176Right-handed 310
Helix 15
AB6
B
177 213Right-handed alpha
Helix 16
AB7
H
28 32Right-handed 310
Helix 17
AB8
H
87 91Right-handed 310
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There are 4 sheets in PDB entry 6Y97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
21 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
113 116parallel
Strand 3
H
93 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
20 25anti-parallel
Strand 3
L
75 79anti-parallel
Strand 4
L
70 71anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 59first strand
Strand 2
L
50 54anti-parallel
Strand 3
L
39 42anti-parallel
Strand 4
L
91 95anti-parallel
Strand 5
L
102 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il