Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y9C entry

There is 1 chain in PDB entry 6Y9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLN 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6Y9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
23 28Right-handed alpha
Helix 3
AA3
A
28 39Right-handed alpha
Helix 4
AA4
A
51 54Right-handed 310
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
133 137Right-handed 310
Helix 7
AA7
A
160 165Right-handed alpha
Helix 8
AA8
A
167 176Right-handed alpha
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
195 204Right-handed alpha
Helix 11
AB2
A
208 213Right-handed alpha
Helix 12
AB3
A
213 219Right-handed alpha
Helix 13
AB4
A
305 318Right-handed alpha
Helix 14
AB5
A
318 334Right-handed alpha
Helix 15
AB6
A
356 368Right-handed alpha
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There are 3 sheets in PDB entry 6Y9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
149 153anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
67 73anti-parallel
Strand 6
A
58 64anti-parallel
Strand 7
A
98 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
112 114anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 192first strand
Strand 2
A
290 299anti-parallel
Strand 3
A
277 287anti-parallel
Strand 4
A
267 271anti-parallel
Strand 5
A
257 263anti-parallel
Strand 6
A
233 240anti-parallel
Strand 7
A
220 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il