Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y9E entry

There are 6 chains in PDB entry 6Y9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6SER 296
B
 ASP 6SER 296
C
 ASP 6SER 296
D
 ILE 7ALA 297
E
 LEU 9ALA 295
F
 ASP 6ALA 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are101 helices in PDB entry 6Y9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed 310
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
77 92Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
141 152Right-handed alpha
Helix 8
AA8
A
155 162Right-handed alpha
Helix 9
AA9
A
165 170Right-handed alpha
Helix 10
AB1
A
170 175Right-handed alpha
Helix 11
AB2
A
181 190Right-handed alpha
Helix 12
AB3
A
195 197Right-handed 310
Helix 13
AB4
A
198 208Right-handed alpha
Helix 14
AB5
A
214 231Right-handed alpha
Helix 15
AB6
A
247 258Right-handed alpha
Helix 16
AB7
A
272 276Right-handed 310
Helix 17
AB8
A
277 295Right-handed alpha
Helix 18
AB9
B
41 46Right-handed 310
Helix 19
AC1
B
48 53Right-handed alpha
Helix 20
AC2
B
54 56Right-handed 310
Helix 21
AC3
B
77 92Right-handed alpha
Helix 22
AC4
B
103 116Right-handed alpha
Helix 23
AC5
B
134 138Right-handed 310
Helix 24
AC6
B
141 152Right-handed alpha
Helix 25
AC7
B
155 162Right-handed alpha
Helix 26
AC8
B
165 170Right-handed alpha
Helix 27
AC9
B
170 175Right-handed alpha
Helix 28
AD1
B
181 190Right-handed alpha
Helix 29
AD2
B
195 197Right-handed 310
Helix 30
AD3
B
198 208Right-handed alpha
Helix 31
AD4
B
214 231Right-handed alpha
Helix 32
AD5
B
247 258Right-handed alpha
Helix 33
AD6
B
272 276Right-handed 310
Helix 34
AD7
B
277 296Right-handed alpha
Helix 35
AD8
C
41 46Right-handed 310
Helix 36
AD9
C
48 53Right-handed alpha
Helix 37
AE1
C
54 56Right-handed 310
Helix 38
AE2
C
77 92Right-handed alpha
Helix 39
AE3
C
103 116Right-handed alpha
Helix 40
AE4
C
134 138Right-handed 310
Helix 41
AE5
C
141 152Right-handed alpha
Helix 42
AE6
C
155 162Right-handed alpha
Helix 43
AE7
C
165 170Right-handed alpha
Helix 44
AE8
C
170 175Right-handed alpha
Helix 45
AE9
C
181 190Right-handed alpha
Helix 46
AF1
C
195 197Right-handed 310
Helix 47
AF2
C
198 208Right-handed alpha
Helix 48
AF3
C
214 231Right-handed alpha
Helix 49
AF4
C
247 258Right-handed alpha
Helix 50
AF5
C
272 276Right-handed 310
Helix 51
AF6
C
277 295Right-handed alpha
Helix 52
AF7
D
41 46Right-handed 310
Helix 53
AF8
D
48 53Right-handed alpha
Helix 54
AF9
D
77 92Right-handed alpha
Helix 55
AG1
D
103 116Right-handed alpha
Helix 56
AG2
D
134 138Right-handed 310
Helix 57
AG3
D
141 152Right-handed alpha
Helix 58
AG4
D
155 162Right-handed alpha
Helix 59
AG5
D
165 170Right-handed alpha
Helix 60
AG6
D
170 175Right-handed alpha
Helix 61
AG7
D
181 190Right-handed alpha
Helix 62
AG8
D
195 197Right-handed 310
Helix 63
AG9
D
198 208Right-handed alpha
Helix 64
AH1
D
214 231Right-handed alpha
Helix 65
AH2
D
247 258Right-handed alpha
Helix 66
AH3
D
272 276Right-handed 310
Helix 67
AH4
D
277 296Right-handed alpha
Helix 68
AH5
E
41 46Right-handed 310
Helix 69
AH6
E
48 53Right-handed alpha
Helix 70
AH7
E
54 56Right-handed 310
Helix 71
AH8
E
77 92Right-handed alpha
Helix 72
AH9
E
103 116Right-handed alpha
Helix 73
AI1
E
134 138Right-handed 310
Helix 74
AI2
E
141 152Right-handed alpha
Helix 75
AI3
E
155 162Right-handed alpha
Helix 76
AI4
E
165 170Right-handed alpha
Helix 77
AI5
E
170 175Right-handed alpha
Helix 78
AI6
E
181 190Right-handed alpha
Helix 79
AI7
E
195 197Right-handed 310
Helix 80
AI8
E
198 208Right-handed alpha
Helix 81
AI9
E
214 231Right-handed alpha
Helix 82
AJ1
E
247 258Right-handed alpha
Helix 83
AJ2
E
272 277Right-handed alpha
Helix 84
AJ3
E
277 295Right-handed alpha
Helix 85
AJ4
F
41 46Right-handed 310
Helix 86
AJ5
F
48 53Right-handed alpha
Helix 87
AJ6
F
54 56Right-handed 310
Helix 88
AJ7
F
77 92Right-handed alpha
Helix 89
AJ8
F
103 116Right-handed alpha
Helix 90
AJ9
F
134 138Right-handed 310
Helix 91
AK1
F
141 152Right-handed alpha
Helix 92
AK2
F
155 162Right-handed alpha
Helix 93
AK3
F
165 170Right-handed alpha
Helix 94
AK4
F
170 175Right-handed alpha
Helix 95
AK5
F
181 190Right-handed alpha
Helix 96
AK6
F
195 197Right-handed 310
Helix 97
AK7
F
198 208Right-handed alpha
Helix 98
AK8
F
214 231Right-handed alpha
Helix 99
AK9
F
247 257Right-handed alpha
Helix 100
AL1
F
272 276Right-handed 310
Helix 101
AL2
F
277 294Right-handed alpha
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There are 6 sheets in PDB entry 6Y9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
57 61anti-parallel
Strand 4
A
31 35parallel
Strand 5
A
97 102parallel
Strand 6
A
120 126parallel
Strand 7
A
235 242parallel
Strand 8
A
261 269parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 14first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
57 61anti-parallel
Strand 4
B
31 35parallel
Strand 5
B
97 102parallel
Strand 6
B
120 126parallel
Strand 7
B
235 242parallel
Strand 8
B
261 269parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 14first strand
Strand 2
C
17 24anti-parallel
Strand 3
C
57 61anti-parallel
Strand 4
C
31 35parallel
Strand 5
C
97 102parallel
Strand 6
C
120 126parallel
Strand 7
C
235 242parallel
Strand 8
C
261 269parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 14first strand
Strand 2
D
17 24anti-parallel
Strand 3
D
57 61anti-parallel
Strand 4
D
31 35parallel
Strand 5
D
97 102parallel
Strand 6
D
120 126parallel
Strand 7
D
235 242parallel
Strand 8
D
261 269parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
17 24anti-parallel
Strand 3
E
57 61anti-parallel
Strand 4
E
31 35parallel
Strand 5
E
97 102parallel
Strand 6
E
120 126parallel
Strand 7
E
235 242parallel
Strand 8
E
261 269parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 14first strand
Strand 2
F
17 24anti-parallel
Strand 3
F
57 61anti-parallel
Strand 4
F
31 35parallel
Strand 5
F
97 102parallel
Strand 6
F
120 126parallel
Strand 7
F
235 242parallel
Strand 8
F
261 269parallel
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