Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y9G entry

There are 2 chains in PDB entry 6Y9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10ARG 296
B
 PRO 10ALA 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6Y9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 48Right-handed 310
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
79 95Right-handed alpha
Helix 4
AA4
A
105 118Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
142 153Right-handed alpha
Helix 7
AA7
A
156 163Right-handed alpha
Helix 8
AA8
A
169 176Right-handed alpha
Helix 9
AA9
A
182 191Right-handed alpha
Helix 10
AB1
A
196 198Right-handed 310
Helix 11
AB2
A
199 208Right-handed alpha
Helix 12
AB3
A
215 232Right-handed alpha
Helix 13
AB4
A
248 259Right-handed alpha
Helix 14
AB5
A
273 277Right-handed 310
Helix 15
AB6
A
278 295Right-handed alpha
Helix 16
AB7
B
43 48Right-handed 310
Helix 17
AB8
B
50 55Right-handed alpha
Helix 18
AB9
B
79 95Right-handed alpha
Helix 19
AC1
B
105 118Right-handed alpha
Helix 20
AC2
B
137 141Right-handed 310
Helix 21
AC3
B
142 144Right-handed 310
Helix 22
AC4
B
145 153Right-handed alpha
Helix 23
AC5
B
156 163Right-handed alpha
Helix 24
AC6
B
166 171Right-handed alpha
Helix 25
AC7
B
171 176Right-handed alpha
Helix 26
AC8
B
182 191Right-handed alpha
Helix 27
AC9
B
196 198Right-handed 310
Helix 28
AD1
B
199 209Right-handed alpha
Helix 29
AD2
B
215 232Right-handed alpha
Helix 30
AD3
B
248 259Right-handed alpha
Helix 31
AD4
B
273 277Right-handed 310
Helix 32
AD5
B
278 294Right-handed alpha
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There are 2 sheets in PDB entry 6Y9G. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
33 37parallel
Strand 5
A
99 104parallel
Strand 6
A
122 128parallel
Strand 7
A
236 243parallel
Strand 8
A
262 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
21 28anti-parallel
Strand 3
B
59 63anti-parallel
Strand 4
B
33 37parallel
Strand 5
B
99 104parallel
Strand 6
B
122 128parallel
Strand 7
B
236 243parallel
Strand 8
B
262 270parallel
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