Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y9L entry

There are 4 chains in PDB entry 6Y9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 109	ILE 304
D	LEU 110	LYS 305
A	ASP 109	LYS 305
C	PRO 111	ILE 304

There are 13 helices in PDB entry 6Y9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	110	117	Right-handed 310
Helix 2	AA2	B	176	178	Right-handed 310
Helix 3	AA3	B	179	184	Right-handed alpha
Helix 4	AA4	D	116	120	Right-handed 310
Helix 5	AA5	D	176	178	Right-handed 310
Helix 6	AA6	D	179	184	Right-handed alpha
Helix 7	AA7	D	296	304	Right-handed alpha
Helix 8	AA8	A	110	115	Right-handed 310
Helix 9	AA9	A	152	156	Right-handed 310
Helix 10	AB1	A	176	180	Right-handed 310
Helix 11	AB2	A	299	304	Right-handed alpha
Helix 12	AB3	C	176	180	Right-handed 310
Helix 13	AB4	C	296	304	Right-handed alpha

There are 16 sheets in PDB entry 6Y9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	127	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	142	147	anti-parallel
Strand 4	B	203	204	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	212	220	anti-parallel
Strand 3	B	187	192	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	236	240	anti-parallel
Strand 3	B	268	271	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	282	285	anti-parallel
Strand 4	B	289	291	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	127	first strand
Strand 2	D	132	137	anti-parallel
Strand 3	D	142	147	anti-parallel
Strand 4	D	200	204	parallel
Strand 5	D	207	220	anti-parallel
Strand 6	D	171	173	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	127	first strand
Strand 2	D	132	137	anti-parallel
Strand 3	D	142	147	anti-parallel
Strand 4	D	200	204	parallel
Strand 5	D	207	220	anti-parallel
Strand 6	D	187	192	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	236	240	anti-parallel
Strand 3	D	267	271	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	246	250	anti-parallel
Strand 3	D	282	285	anti-parallel
Strand 4	D	288	291	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	141	147	anti-parallel
Strand 4	A	200	204	parallel
Strand 5	A	207	220	anti-parallel
Strand 6	A	171	173	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	141	147	anti-parallel
Strand 4	A	200	204	parallel
Strand 5	A	207	220	anti-parallel
Strand 6	A	186	192	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	236	240	anti-parallel
Strand 3	A	267	271	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	282	285	anti-parallel
Strand 4	A	288	291	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	142	147	anti-parallel
Strand 4	C	201	204	parallel
Strand 5	C	207	210	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	212	220	anti-parallel
Strand 3	C	186	192	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	236	240	anti-parallel
Strand 3	C	267	271	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	282	285	anti-parallel
Strand 4	C	288	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9L