Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y9M entry

There are 4 chains in PDB entry 6Y9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 110	ILE 304
B	LEU 110	ILE 310
C	SER 108	ILE 303
D	LEU 110	LYS 308

There are 15 helices in PDB entry 6Y9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	116	Right-handed alpha
Helix 2	AA2	A	178	183	Right-handed alpha
Helix 3	AA3	A	296	304	Right-handed alpha
Helix 4	AA4	B	110	114	Right-handed 310
Helix 5	AA5	B	152	156	Right-handed 310
Helix 6	AA6	B	178	184	Right-handed alpha
Helix 7	AA7	B	296	309	Right-handed alpha
Helix 8	AA8	C	111	116	Right-handed alpha
Helix 9	AA9	C	176	178	Right-handed 310
Helix 10	AB1	C	179	184	Right-handed alpha
Helix 11	AB2	C	273	278	Right-handed 310
Helix 12	AB3	C	298	302	Right-handed 310
Helix 13	AB4	D	111	116	Right-handed alpha
Helix 14	AB5	D	179	184	Right-handed alpha
Helix 15	AB6	D	296	307	Right-handed alpha

There are 16 sheets in PDB entry 6Y9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	141	147	anti-parallel
Strand 4	A	200	204	parallel
Strand 5	A	207	220	anti-parallel
Strand 6	A	171	173	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	141	147	anti-parallel
Strand 4	A	200	204	parallel
Strand 5	A	207	220	anti-parallel
Strand 6	A	184	192	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	236	240	anti-parallel
Strand 3	A	267	271	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	247	250	anti-parallel
Strand 3	A	282	285	anti-parallel
Strand 4	A	288	291	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	132	135	anti-parallel
Strand 3	B	145	147	anti-parallel
Strand 4	B	200	204	parallel
Strand 5	B	208	220	anti-parallel
Strand 6	B	171	173	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	132	135	anti-parallel
Strand 3	B	145	147	anti-parallel
Strand 4	B	200	204	parallel
Strand 5	B	208	220	anti-parallel
Strand 6	B	187	192	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	236	240	anti-parallel
Strand 3	B	268	271	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	247	251	anti-parallel
Strand 3	B	282	285	anti-parallel
Strand 4	B	288	291	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	142	147	anti-parallel
Strand 4	C	200	204	parallel
Strand 5	C	207	220	anti-parallel
Strand 6	C	171	173	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	142	147	anti-parallel
Strand 4	C	200	204	parallel
Strand 5	C	207	220	anti-parallel
Strand 6	C	186	192	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	236	240	anti-parallel
Strand 3	C	267	271	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	282	285	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	132	138	anti-parallel
Strand 3	D	141	147	anti-parallel
Strand 4	D	200	204	parallel
Strand 5	D	208	220	anti-parallel
Strand 6	D	171	173	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	132	138	anti-parallel
Strand 3	D	141	147	anti-parallel
Strand 4	D	200	204	parallel
Strand 5	D	208	220	anti-parallel
Strand 6	D	187	192	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	240	first strand
Strand 2	D	267	271	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	246	251	anti-parallel
Strand 3	D	282	285	anti-parallel
Strand 4	D	288	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9M