Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y9Q entry

There are 2 chains in PDB entry 6Y9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 812MET 905
D
 GLY 739ASP 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 6Y9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
849 854Right-handed alpha
Helix 2
AA2
B
875 889Right-handed alpha
Helix 3
AA3
D
746 748Right-handed 310
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There are 2 sheets in PDB entry 6Y9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
814 819first strand
Strand 2
B
894 900anti-parallel
Strand 3
B
862 866anti-parallel
Strand 4
B
869 870anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
841 845first strand
Strand 2
B
827 830anti-parallel
Strand 3
D
742 744anti-parallel
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