Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y9T entry

There are 2 chains in PDB entry 6Y9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 550
B
 SER 2GLU 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6Y9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
14 18Right-handed 310
Helix 3
AA3
A
28 35Right-handed alpha
Helix 4
AA4
A
35 43Right-handed alpha
Helix 5
AA5
A
76 90Right-handed alpha
Helix 6
AA6
A
107 116Right-handed alpha
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
173 191Right-handed alpha
Helix 9
AA9
A
199 203Right-handed 310
Helix 10
AB1
A
222 227Right-handed alpha
Helix 11
AB2
A
229 247Right-handed alpha
Helix 12
AB3
A
260 269Right-handed alpha
Helix 13
AB4
A
270 273Right-handed 310
Helix 14
AB5
A
305 320Right-handed alpha
Helix 15
AB6
A
337 342Right-handed alpha
Helix 16
AB7
A
345 358Right-handed alpha
Helix 17
AB8
A
380 385Right-handed 310
Helix 18
AB9
A
388 400Right-handed alpha
Helix 19
AC1
A
402 412Right-handed alpha
Helix 20
AC2
A
415 419Right-handed 310
Helix 21
AC3
A
427 432Right-handed 310
Helix 22
AC4
A
448 455Right-handed alpha
Helix 23
AC5
A
458 471Right-handed alpha
Helix 24
AC6
A
472 478Right-handed alpha
Helix 25
AC7
B
3 8Right-handed 310
Helix 26
AC8
B
14 18Right-handed 310
Helix 27
AC9
B
28 35Right-handed alpha
Helix 28
AD1
B
35 43Right-handed alpha
Helix 29
AD2
B
76 90Right-handed alpha
Helix 30
AD3
B
107 116Right-handed alpha
Helix 31
AD4
B
119 123Right-handed 310
Helix 32
AD5
B
173 191Right-handed alpha
Helix 33
AD6
B
199 203Right-handed 310
Helix 34
AD7
B
222 227Right-handed alpha
Helix 35
AD8
B
229 247Right-handed alpha
Helix 36
AD9
B
260 269Right-handed alpha
Helix 37
AE1
B
270 273Right-handed 310
Helix 38
AE2
B
305 320Right-handed alpha
Helix 39
AE3
B
337 342Right-handed alpha
Helix 40
AE4
B
345 358Right-handed alpha
Helix 41
AE5
B
380 385Right-handed 310
Helix 42
AE6
B
388 400Right-handed alpha
Helix 43
AE7
B
402 412Right-handed alpha
Helix 44
AE8
B
415 419Right-handed 310
Helix 45
AE9
B
427 432Right-handed 310
Helix 46
AF1
B
448 455Right-handed alpha
Helix 47
AF2
B
458 471Right-handed alpha
Helix 48
AF3
B
472 478Right-handed alpha
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There are 8 sheets in PDB entry 6Y9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
251 255parallel
Strand 3
A
194 198parallel
Strand 4
A
93 99parallel
Strand 5
A
46 49parallel
Strand 6
A
10 13parallel
Strand 7
A
362 366parallel
Strand 8
A
327 328parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
157 159anti-parallel
Strand 3
A
147 149anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 482first strand
Strand 2
A
489 495anti-parallel
Strand 3
A
500 506anti-parallel
Strand 4
A
544 548anti-parallel
Strand 5
A
524 528anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 515first strand
Strand 2
A
536 539anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
251 255parallel
Strand 3
B
194 198parallel
Strand 4
B
93 99parallel
Strand 5
B
46 49parallel
Strand 6
B
10 13parallel
Strand 7
B
362 366parallel
Strand 8
B
327 328parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
157 159anti-parallel
Strand 3
B
147 149anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 482first strand
Strand 2
B
489 495anti-parallel
Strand 3
B
500 506anti-parallel
Strand 4
B
544 548anti-parallel
Strand 5
B
524 528anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 515first strand
Strand 2
B
536 539anti-parallel
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