Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y9V entry

There are 13 chains in PDB entry 6Y9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	SER 146
B	PRO 1	GLY 220
C	PRO 1	GLY 220
D	PRO 1	GLY 220
G	PRO 1	GLY 220
H	PRO 1	GLY 220
J	VAL 2	GLU 165
N	PRO 147	GLY 220
Y	PRO 1	SER 146
d	PRO 1	GLY 220
e	PRO 1	GLY 220
j	PRO 147	GLY 220
k	PRO 1	GLY 220

There are117 helices in PDB entry 6Y9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	35	44	Right-handed alpha
Helix 3	AA3	A	48	58	Right-handed alpha
Helix 4	AA4	A	62	84	Right-handed alpha
Helix 5	AA5	A	100	105	Right-handed alpha
Helix 6	AA6	A	110	120	Right-handed alpha
Helix 7	AA7	A	125	145	Right-handed alpha
Helix 8	AA8	B	16	27	Right-handed alpha
Helix 9	AA9	B	35	44	Right-handed alpha
Helix 10	AB1	B	48	58	Right-handed alpha
Helix 11	AB2	B	62	84	Right-handed alpha
Helix 12	AB3	B	110	120	Right-handed alpha
Helix 13	AB4	B	125	145	Right-handed alpha
Helix 14	AB5	B	149	153	Right-handed 310
Helix 15	AB6	B	160	175	Right-handed alpha
Helix 16	AB7	B	178	190	Right-handed alpha
Helix 17	AB8	B	195	206	Right-handed alpha
Helix 18	AB9	B	210	218	Right-handed alpha
Helix 19	AC1	C	16	31	Right-handed alpha
Helix 20	AC2	C	33	35	Right-handed 310
Helix 21	AC3	C	36	44	Right-handed alpha
Helix 22	AC4	C	48	58	Right-handed alpha
Helix 23	AC5	C	62	84	Right-handed alpha
Helix 24	AC6	C	100	105	Right-handed alpha
Helix 25	AC7	C	110	119	Right-handed alpha
Helix 26	AC8	C	125	145	Right-handed alpha
Helix 27	AC9	C	160	174	Right-handed alpha
Helix 28	AD1	C	179	193	Right-handed alpha
Helix 29	AD2	C	195	204	Right-handed alpha
Helix 30	AD3	C	210	219	Right-handed alpha
Helix 31	AD4	D	16	30	Right-handed alpha
Helix 32	AD5	D	35	44	Right-handed alpha
Helix 33	AD6	D	48	58	Right-handed alpha
Helix 34	AD7	D	62	83	Right-handed alpha
Helix 35	AD8	D	100	105	Right-handed alpha
Helix 36	AD9	D	110	118	Right-handed alpha
Helix 37	AE1	D	126	146	Right-handed alpha
Helix 38	AE2	D	160	174	Right-handed alpha
Helix 39	AE3	D	178	193	Right-handed alpha
Helix 40	AE4	D	195	206	Right-handed alpha
Helix 41	AE5	D	210	218	Right-handed alpha
Helix 42	AE6	G	16	31	Right-handed alpha
Helix 43	AE7	G	35	44	Right-handed alpha
Helix 44	AE8	G	48	58	Right-handed alpha
Helix 45	AE9	G	62	84	Right-handed alpha
Helix 46	AF1	G	100	105	Right-handed alpha
Helix 47	AF2	G	110	120	Right-handed alpha
Helix 48	AF3	G	125	145	Right-handed alpha
Helix 49	AF4	G	160	175	Right-handed alpha
Helix 50	AF5	G	178	193	Right-handed alpha
Helix 51	AF6	G	195	206	Right-handed alpha
Helix 52	AF7	G	210	218	Right-handed alpha
Helix 53	AF8	H	16	31	Right-handed alpha
Helix 54	AF9	H	35	44	Right-handed alpha
Helix 55	AG1	H	48	58	Right-handed alpha
Helix 56	AG2	H	62	84	Right-handed alpha
Helix 57	AG3	H	100	105	Right-handed alpha
Helix 58	AG4	H	110	120	Right-handed alpha
Helix 59	AG5	H	125	145	Right-handed alpha
Helix 60	AG6	H	160	175	Right-handed alpha
Helix 61	AG7	H	178	193	Right-handed alpha
Helix 62	AG8	H	195	206	Right-handed alpha
Helix 63	AG9	H	210	218	Right-handed alpha
Helix 64	AH1	J	29	42	Right-handed alpha
Helix 65	AH2	J	119	123	Right-handed 310
Helix 66	AH3	J	135	144	Right-handed alpha
Helix 67	AH4	N	149	153	Right-handed 310
Helix 68	AH5	N	160	175	Right-handed alpha
Helix 69	AH6	N	178	190	Right-handed alpha
Helix 70	AH7	N	195	206	Right-handed alpha
Helix 71	AH8	N	210	218	Right-handed alpha
Helix 72	AH9	Y	16	30	Right-handed alpha
Helix 73	AI1	Y	35	44	Right-handed alpha
Helix 74	AI2	Y	48	58	Right-handed alpha
Helix 75	AI3	Y	62	83	Right-handed alpha
Helix 76	AI4	Y	100	105	Right-handed alpha
Helix 77	AI5	Y	110	118	Right-handed alpha
Helix 78	AI6	Y	126	146	Right-handed alpha
Helix 79	AI7	d	16	30	Right-handed alpha
Helix 80	AI8	d	35	44	Right-handed alpha
Helix 81	AI9	d	48	58	Right-handed alpha
Helix 82	AJ1	d	62	83	Right-handed alpha
Helix 83	AJ2	d	100	105	Right-handed alpha
Helix 84	AJ3	d	110	118	Right-handed alpha
Helix 85	AJ4	d	126	146	Right-handed alpha
Helix 86	AJ5	d	160	174	Right-handed alpha
Helix 87	AJ6	d	178	193	Right-handed alpha
Helix 88	AJ7	d	195	206	Right-handed alpha
Helix 89	AJ8	d	210	218	Right-handed alpha
Helix 90	AJ9	e	16	31	Right-handed alpha
Helix 91	AK1	e	35	44	Right-handed alpha
Helix 92	AK2	e	48	58	Right-handed alpha
Helix 93	AK3	e	62	84	Right-handed alpha
Helix 94	AK4	e	100	105	Right-handed alpha
Helix 95	AK5	e	110	120	Right-handed alpha
Helix 96	AK6	e	125	145	Right-handed alpha
Helix 97	AK7	e	149	153	Right-handed 310
Helix 98	AK8	e	160	175	Right-handed alpha
Helix 99	AK9	e	178	189	Right-handed alpha
Helix 100	AL1	e	195	206	Right-handed alpha
Helix 101	AL2	e	210	218	Right-handed alpha
Helix 102	AL3	j	149	153	Right-handed 310
Helix 103	AL4	j	160	175	Right-handed alpha
Helix 104	AL5	j	178	189	Right-handed alpha
Helix 105	AL6	j	195	206	Right-handed alpha
Helix 106	AL7	j	210	218	Right-handed alpha
Helix 107	AL8	k	16	31	Right-handed alpha
Helix 108	AL9	k	36	44	Right-handed alpha
Helix 109	AM1	k	48	58	Right-handed alpha
Helix 110	AM2	k	62	84	Right-handed alpha
Helix 111	AM3	k	100	105	Right-handed alpha
Helix 112	AM4	k	110	119	Right-handed alpha
Helix 113	AM5	k	125	145	Right-handed alpha
Helix 114	AM6	k	160	176	Right-handed alpha
Helix 115	AM7	k	179	193	Right-handed alpha
Helix 116	AM8	k	195	204	Right-handed alpha
Helix 117	AM9	k	210	219	Right-handed alpha

There are 8 sheets in PDB entry 6Y9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	10	12	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	11	12	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	10	11	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	4	first strand
Strand 2	G	10	12	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	10	12	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	57	first strand
Strand 2	J	61	64	anti-parallel
Strand 3	J	112	115	anti-parallel
Strand 4	J	97	100	anti-parallel
Strand 5	J	128	134	anti-parallel
Strand 6	J	15	24	anti-parallel
Strand 7	J	5	12	anti-parallel
Strand 8	J	156	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	2	3	first strand
Strand 2	e	11	12	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	3	4	first strand
Strand 2	k	10	11	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y9V