Analysis of interatomic Contacts of Structural Units in PDB entry:
6YA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YA1 entry

There is 1 chain in PDB entry 6YA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1ASP 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6YA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 116Right-handed alpha
Helix 2
AA2
A
164 179Right-handed alpha
Helix 3
AA3
A
186 210Right-handed alpha
Helix 4
AA4
A
222 226Right-handed 310
Helix 5
AA5
A
235 240Right-handed 310
Helix 6
AA6
A
245 249Right-handed 310
Helix 7
AA7
A
254 259Right-handed alpha
Helix 8
AA8
A
259 271Right-handed alpha
Helix 9
AA9
A
276 291Right-handed alpha
Helix 10
AB1
A
297 313Right-handed alpha
Helix 11
AB2
A
315 326Right-handed alpha
Helix 12
AB3
A
329 333Right-handed 310
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There are 4 sheets in PDB entry 6YA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
28 33anti-parallel
Strand 4
A
38 40anti-parallel
Strand 5
A
63 65anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
78 79parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
130 136parallel
Strand 3
A
150 153parallel
Strand 4
A
143 145anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
231 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il