Analysis of interatomic Contacts of Structural Units in PDB entry:
6YA2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YA2 entry

There are 3 chains in PDB entry 6YA2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 109ASN 296
B
 VAL 107ASN 296
C
 LEU 110THR 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 6YA2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
176 178Right-handed 310
Helix 2
AA2
A
179 183Right-handed alpha
Helix 3
AA3
A
274 278Right-handed 310
Helix 4
AA4
B
110 115Right-handed 310
Helix 5
AA5
B
176 178Right-handed 310
Helix 6
AA6
B
179 183Right-handed alpha
Helix 7
AA7
B
257 261Right-handed 310
Helix 8
AA8
B
273 277Right-handed 310
Helix 9
AA9
C
116 120Right-handed 310
Helix 10
AB1
C
179 183Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 6YA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
200 204parallel
Strand 5
A
207 220anti-parallel
Strand 6
A
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
200 204parallel
Strand 5
A
207 220anti-parallel
Strand 6
A
184 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
236 251anti-parallel
Strand 3
A
262 271anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
236 251anti-parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
288 292anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 127first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
200 204parallel
Strand 5
B
207 220anti-parallel
Strand 6
B
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 127first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
200 204parallel
Strand 5
B
207 220anti-parallel
Strand 6
B
184 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
236 240anti-parallel
Strand 3
B
267 271anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
246 251anti-parallel
Strand 3
B
282 285anti-parallel
Strand 4
B
288 291anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 127first strand
Strand 2
C
132 138anti-parallel
Strand 3
C
141 147anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
213 220anti-parallel
Strand 3
C
184 191anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 228first strand
Strand 2
C
237 240anti-parallel
Strand 3
C
267 270anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 264first strand
Strand 2
C
246 251anti-parallel
Strand 3
C
282 285anti-parallel
Strand 4
C
288 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il