Analysis of interatomic Contacts of Structural Units in PDB entry:
6YA6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YA6 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 6YA6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38SER 573
B
 GLY 207MET 225
B
 GLN 227PRO 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6YA6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 51Right-handed alpha
Helix 2
AA2
A
52 57Right-handed 310
Helix 3
AA3
A
97 111Right-handed alpha
Helix 4
AA4
A
141 146Right-handed alpha
Helix 5
AA5
A
150 171Right-handed alpha
Helix 6
AA6
A
179 181Right-handed 310
Helix 7
AA7
A
208 214Right-handed 310
Helix 8
AA8
A
360 365Right-handed alpha
Helix 9
AA9
A
381 386Right-handed alpha
Helix 10
AB1
A
393 410Right-handed alpha
Helix 11
AB2
A
419 432Right-handed alpha
Helix 12
AB3
A
432 443Right-handed alpha
Helix 13
AB4
A
457 467Right-handed alpha
Helix 14
AB5
A
539 550Right-handed alpha
Helix 15
AB6
A
559 564Right-handed alpha
Helix 16
AB7
A
565 570Right-handed 310
Helix 17
AB8
B
207 211Right-handed 310
Helix 18
AB9
B
305 310Right-handed alpha
Helix 19
AC1
B
312 320Right-handed alpha
Helix 20
AC2
B
324 332Right-handed alpha
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There are 6 sheets in PDB entry 6YA6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 66first strand
Strand 2
A
70 78anti-parallel
Strand 3
A
84 92anti-parallel
Strand 4
A
129 135anti-parallel
Strand 5
A
122 126anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
201 202anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
191 194anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
B
213 214anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 449first strand
Strand 2
B
219 224anti-parallel
Strand 3
B
232 235anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il