Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YAA entry

There is 1 chain in PDB entry 6YAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6YAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
25 37Right-handed alpha
Helix 3
AA3
A
48 57Right-handed alpha
Helix 4
AA4
A
59 68Right-handed alpha
Helix 5
AA5
A
68 73Right-handed alpha
Helix 6
AA6
A
73 78Right-handed alpha
Helix 7
AA7
A
89 111Right-handed alpha
Helix 8
AA8
A
114 120Right-handed alpha
Helix 9
AA9
A
143 145Right-handed 310
Helix 10
AB1
A
177 182Right-handed alpha
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
232 240Right-handed alpha
Helix 13
AB4
A
247 275Right-handed alpha
Helix 14
AB5
A
277 281Right-handed 310
Helix 15
AB6
A
287 307Right-handed alpha
Helix 16
AB7
A
310 329Right-handed alpha
Helix 17
AB8
A
337 342Right-handed alpha
Helix 18
AB9
A
403 406Right-handed 310
Helix 19
AC1
A
407 420Right-handed alpha
Helix 20
AC2
A
439 453Right-handed alpha
Helix 21
AC3
A
470 477Right-handed alpha
Helix 22
AC4
A
517 524Right-handed alpha
Helix 23
AC5
A
538 555Right-handed alpha
Helix 24
AC6
A
572 576Right-handed 310
Helix 25
AC7
A
580 582Right-handed 310
Helix 26
AC8
A
583 588Right-handed alpha
Helix 27
AC9
A
606 617Right-handed alpha
Helix 28
AD1
A
628 640Right-handed alpha
Helix 29
AD2
A
648 652Right-handed 310
Helix 30
AD3
A
655 660Right-handed alpha
Helix 31
AD4
A
662 673Right-handed alpha
Helix 32
AD5
A
680 694Right-handed alpha
Helix 33
AD6
A
707 714Right-handed alpha
Helix 34
AD7
A
724 730Right-handed alpha
Helix 35
AD8
A
739 781Right-handed alpha
Helix 36
AD9
A
788 798Right-handed alpha
Helix 37
AE1
A
800 808Right-handed alpha
Helix 38
AE2
A
814 818Right-handed 310
Helix 39
AE3
A
830 855Right-handed alpha
Helix 40
AE4
A
896 915Right-handed alpha
Helix 41
AE5
A
930 947Right-handed alpha
Helix 42
AE6
A
952 957Right-handed alpha
Helix 43
AE7
A
967 975Right-handed alpha
Helix 44
AE8
A
976 992Right-handed alpha
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There are 5 sheets in PDB entry 6YAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 702parallel
Strand 5
A
347 351parallel
Strand 6
A
620 625parallel
Strand 7
A
675 677parallel
Strand 8
A
653 654parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 383first strand
Strand 2
A
362 373anti-parallel
Strand 3
A
591 600anti-parallel
Strand 4
A
560 567anti-parallel
Strand 5
A
511 516anti-parallel
Strand 6
A
493 500anti-parallel
Strand 7
A
479 488anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 383first strand
Strand 2
A
362 373anti-parallel
Strand 3
A
591 600anti-parallel
Strand 4
A
525 527parallel
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