Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YAC entry

There are 17 chains in PDB entry 6YAC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	GLY 758
B	ALA 2	GLY 734
C	SER 2	TYR 81
D	GLY 69	LEU 211
E	PRO 64	LYS 129
F	ASP 78	VAL 231
G	LEU 58	PHE 154
H	VAL 53	GLY 140
I	ILE 2	LEU 32
J	MET 1	PHE 42
K	PHE 46	GLY 126
L	TYR 54	PRO 210
1	ASP 40	PRO 232
2	THR 58	ALA 265
3	ARG 55	HIS 275
4	LYS 52	LEU 249
N	ALA 1	ALA 97

There are146 helices in PDB entry 6YAC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	46	Right-handed alpha
Helix 2	AA2	A	51	60	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed alpha
Helix 4	AA4	A	70	103	Right-handed alpha
Helix 5	AA5	A	105	112	Right-handed alpha
Helix 6	AA6	A	128	133	Right-handed 310
Helix 7	AA7	A	148	157	Right-handed alpha
Helix 8	AA8	A	160	188	Right-handed alpha
Helix 9	AA9	A	192	197	Right-handed alpha
Helix 10	AB1	A	198	209	Right-handed alpha
Helix 11	AB2	A	210	225	Right-handed alpha
Helix 12	AB3	A	225	235	Right-handed alpha
Helix 13	AB4	A	244	251	Right-handed alpha
Helix 14	AB5	A	252	259	Right-handed alpha
Helix 15	AB6	A	260	264	Right-handed 310
Helix 16	AB7	A	266	272	Right-handed alpha
Helix 17	AB8	A	273	278	Right-handed 310
Helix 18	AB9	A	295	314	Right-handed alpha
Helix 19	AC1	A	326	334	Right-handed alpha
Helix 20	AC2	A	353	379	Right-handed alpha
Helix 21	AC3	A	388	421	Right-handed alpha
Helix 22	AC4	A	429	438	Right-handed alpha
Helix 23	AC5	A	438	456	Right-handed alpha
Helix 24	AC6	A	457	470	Right-handed alpha
Helix 25	AC7	A	472	476	Right-handed 310
Helix 26	AC8	A	486	499	Right-handed alpha
Helix 27	AC9	A	535	562	Right-handed alpha
Helix 28	AD1	A	571	576	Right-handed 310
Helix 29	AD2	A	593	624	Right-handed alpha
Helix 30	AD3	A	641	646	Right-handed alpha
Helix 31	AD4	A	648	656	Right-handed alpha
Helix 32	AD5	A	656	661	Right-handed alpha
Helix 33	AD6	A	663	667	Right-handed 310
Helix 34	AD7	A	672	695	Right-handed alpha
Helix 35	AD8	A	696	713	Right-handed alpha
Helix 36	AD9	A	726	757	Right-handed alpha
Helix 37	AE1	B	9	14	Right-handed alpha
Helix 38	AE2	B	18	26	Right-handed alpha
Helix 39	AE3	B	30	34	Right-handed 310
Helix 40	AE4	B	38	72	Right-handed alpha
Helix 41	AE5	B	73	80	Right-handed alpha
Helix 42	AE6	B	97	104	Right-handed alpha
Helix 43	AE7	B	119	128	Right-handed alpha
Helix 44	AE8	B	131	156	Right-handed alpha
Helix 45	AE9	B	170	181	Right-handed alpha
Helix 46	AF1	B	183	197	Right-handed alpha
Helix 47	AF2	B	197	202	Right-handed alpha
Helix 48	AF3	B	211	215	Right-handed 310
Helix 49	AF4	B	222	228	Right-handed alpha
Helix 50	AF5	B	229	235	Right-handed 310
Helix 51	AF6	B	269	288	Right-handed alpha
Helix 52	AF7	B	300	308	Right-handed alpha
Helix 53	AF8	B	321	329	Right-handed alpha
Helix 54	AF9	B	329	355	Right-handed alpha
Helix 55	AG1	B	364	397	Right-handed alpha
Helix 56	AG2	B	400	404	Right-handed 310
Helix 57	AG3	B	406	414	Right-handed alpha
Helix 58	AG4	B	414	446	Right-handed alpha
Helix 59	AG5	B	448	452	Right-handed 310
Helix 60	AG6	B	457	467	Right-handed alpha
Helix 61	AG7	B	483	490	Right-handed alpha
Helix 62	AG8	B	493	502	Right-handed alpha
Helix 63	AG9	B	513	540	Right-handed alpha
Helix 64	AH1	B	549	554	Right-handed 310
Helix 65	AH2	B	562	566	Right-handed 310
Helix 66	AH3	B	571	603	Right-handed alpha
Helix 67	AH4	B	605	613	Right-handed alpha
Helix 68	AH5	B	615	623	Right-handed alpha
Helix 69	AH6	B	625	627	Right-handed 310
Helix 70	AH7	B	628	633	Right-handed alpha
Helix 71	AH8	B	643	666	Right-handed alpha
Helix 72	AH9	B	667	684	Right-handed alpha
Helix 73	AI1	B	701	733	Right-handed alpha
Helix 74	AI2	C	15	21	Right-handed alpha
Helix 75	AI3	C	44	48	Right-handed 310
Helix 76	AI4	C	54	58	Right-handed 310
Helix 77	AI5	C	73	78	Right-handed alpha
Helix 78	AI6	D	92	98	Right-handed alpha
Helix 79	AI7	D	134	148	Right-handed alpha
Helix 80	AI8	D	191	195	Right-handed 310
Helix 81	AI9	D	197	201	Right-handed 310
Helix 82	AJ1	D	207	211	Right-handed 310
Helix 83	AJ2	F	78	82	Right-handed 310
Helix 84	AJ3	F	88	107	Right-handed alpha
Helix 85	AJ4	F	113	136	Right-handed alpha
Helix 86	AJ5	F	153	157	Right-handed 310
Helix 87	AJ6	F	160	186	Right-handed alpha
Helix 88	AJ7	F	192	197	Right-handed alpha
Helix 89	AJ8	F	199	207	Right-handed alpha
Helix 90	AJ9	F	208	211	Right-handed 310
Helix 91	AK1	F	212	223	Right-handed alpha
Helix 92	AK2	G	59	78	Right-handed alpha
Helix 93	AK3	G	79	91	Right-handed alpha
Helix 94	AK4	G	101	104	Right-handed 310
Helix 95	AK5	G	111	116	Right-handed alpha
Helix 96	AK6	G	124	148	Right-handed alpha
Helix 97	AK7	H	60	65	Right-handed alpha
Helix 98	AK8	H	79	90	Right-handed alpha
Helix 99	AK9	H	95	117	Right-handed alpha
Helix 100	AL1	H	123	128	Right-handed alpha
Helix 101	AL2	I	4	14	Right-handed alpha
Helix 102	AL3	I	14	29	Right-handed alpha
Helix 103	AL4	J	2	8	Right-handed alpha
Helix 104	AL5	J	10	33	Right-handed alpha
Helix 105	AL6	K	50	68	Right-handed alpha
Helix 106	AL7	K	100	126	Right-handed alpha
Helix 107	AL8	L	59	63	Right-handed 310
Helix 108	AL9	L	76	85	Right-handed alpha
Helix 109	AM1	L	86	90	Right-handed 310
Helix 110	AM2	L	94	118	Right-handed alpha
Helix 111	AM3	L	127	129	Right-handed 310
Helix 112	AM4	L	130	153	Right-handed alpha
Helix 113	AM5	L	174	178	Right-handed 310
Helix 114	AM6	L	179	203	Right-handed alpha
Helix 115	AM7	1	69	100	Right-handed alpha
Helix 116	AM8	1	106	114	Right-handed 310
Helix 117	AM9	1	130	151	Right-handed alpha
Helix 118	AN1	1	175	205	Right-handed alpha
Helix 119	AN2	1	209	219	Right-handed alpha
Helix 120	AN3	1	226	231	Right-handed alpha
Helix 121	AN4	2	95	129	Right-handed alpha
Helix 122	AN5	2	138	142	Right-handed 310
Helix 123	AN6	2	149	173	Right-handed alpha
Helix 124	AN7	2	197	202	Right-handed alpha
Helix 125	AN8	2	213	242	Right-handed alpha
Helix 126	AN9	2	245	256	Right-handed alpha
Helix 127	AO1	3	63	68	Right-handed alpha
Helix 128	AO2	3	94	116	Right-handed alpha
Helix 129	AO3	3	117	123	Right-handed alpha
Helix 130	AO4	3	129	133	Right-handed 310
Helix 131	AO5	3	142	146	Right-handed 310
Helix 132	AO6	3	155	178	Right-handed alpha
Helix 133	AO7	3	216	248	Right-handed alpha
Helix 134	AO8	3	251	262	Right-handed alpha
Helix 135	AO9	3	267	273	Right-handed 310
Helix 136	AP1	4	84	118	Right-handed alpha
Helix 137	AP2	4	125	130	Right-handed alpha
Helix 138	AP3	4	137	162	Right-handed alpha
Helix 139	AP4	4	186	190	Right-handed 310
Helix 140	AP5	4	197	225	Right-handed alpha
Helix 141	AP6	4	228	238	Right-handed alpha
Helix 142	AP7	4	239	243	Right-handed 310
Helix 143	AP8	4	244	249	Right-handed alpha
Helix 144	AP9	N	23	32	Right-handed alpha
Helix 145	AQ1	N	77	79	Right-handed 310
Helix 146	AQ2	N	92	97	Right-handed alpha

There are 16 sheets in PDB entry 6YAC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	189	191	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	526	529	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	634	636	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	187	188	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	100	105	anti-parallel
Strand 3	D	154	158	anti-parallel
Strand 4	D	166	168	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	120	123	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	120	first strand
Strand 2	E	103	106	anti-parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	73	76	anti-parallel
Strand 5	E	125	127	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	139	140	anti-parallel
Strand 3	F	146	147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	98	99	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	L	164	165	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	17	first strand
Strand 2	N	4	9	anti-parallel
Strand 3	N	85	88	parallel
Strand 4	N	51	53	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	48	49	first strand
Strand 2	N	74	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YAC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAC