Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YAE entry

There are 4 chains in PDB entry 6YAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	ARG 608
B	SER 4	VAL 582
M	MET 1	CYS 435
S	MET 1	GLU 142

There are 86 helices in PDB entry 6YAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	25	46	Right-handed alpha
Helix 3	AA3	A	51	69	Right-handed alpha
Helix 4	AA4	A	75	82	Right-handed alpha
Helix 5	AA5	A	87	101	Right-handed alpha
Helix 6	AA6	A	105	122	Right-handed alpha
Helix 7	AA7	A	124	139	Right-handed alpha
Helix 8	AA8	A	140	148	Right-handed alpha
Helix 9	AA9	A	150	157	Right-handed alpha
Helix 10	AB1	A	161	179	Right-handed alpha
Helix 11	AB2	A	188	195	Right-handed alpha
Helix 12	AB3	A	196	198	Right-handed 310
Helix 13	AB4	A	200	216	Right-handed alpha
Helix 14	AB5	A	218	223	Right-handed 310
Helix 15	AB6	A	224	238	Right-handed alpha
Helix 16	AB7	A	244	246	Right-handed 310
Helix 17	AB8	A	254	267	Right-handed alpha
Helix 18	AB9	A	273	291	Right-handed alpha
Helix 19	AC1	A	299	321	Right-handed alpha
Helix 20	AC2	A	323	338	Right-handed alpha
Helix 21	AC3	A	342	357	Right-handed alpha
Helix 22	AC4	A	362	369	Right-handed alpha
Helix 23	AC5	A	369	380	Right-handed alpha
Helix 24	AC6	A	382	396	Right-handed alpha
Helix 25	AC7	A	401	414	Right-handed alpha
Helix 26	AC8	A	417	436	Right-handed alpha
Helix 27	AC9	A	438	454	Right-handed alpha
Helix 28	AD1	A	455	457	Right-handed 310
Helix 29	AD2	A	458	472	Right-handed alpha
Helix 30	AD3	A	475	489	Right-handed alpha
Helix 31	AD4	A	493	508	Right-handed alpha
Helix 32	AD5	A	509	511	Right-handed 310
Helix 33	AD6	A	518	531	Right-handed alpha
Helix 34	AD7	A	534	552	Right-handed alpha
Helix 35	AD8	A	555	564	Right-handed alpha
Helix 36	AD9	A	565	570	Right-handed alpha
Helix 37	AE1	A	573	588	Right-handed alpha
Helix 38	AE2	A	594	599	Right-handed alpha
Helix 39	AE3	B	13	22	Right-handed alpha
Helix 40	AE4	B	26	44	Right-handed alpha
Helix 41	AE5	B	47	49	Right-handed 310
Helix 42	AE6	B	50	57	Right-handed alpha
Helix 43	AE7	B	62	78	Right-handed alpha
Helix 44	AE8	B	80	86	Right-handed alpha
Helix 45	AE9	B	87	93	Right-handed alpha
Helix 46	AF1	B	99	113	Right-handed alpha
Helix 47	AF2	B	117	131	Right-handed alpha
Helix 48	AF3	B	134	151	Right-handed alpha
Helix 49	AF4	B	156	170	Right-handed alpha
Helix 50	AF5	B	173	190	Right-handed alpha
Helix 51	AF6	B	199	214	Right-handed alpha
Helix 52	AF7	B	217	229	Right-handed alpha
Helix 53	AF8	B	233	245	Right-handed alpha
Helix 54	AF9	B	251	266	Right-handed alpha
Helix 55	AG1	B	276	284	Right-handed alpha
Helix 56	AG2	B	284	291	Right-handed alpha
Helix 57	AG3	B	295	313	Right-handed alpha
Helix 58	AG4	B	331	346	Right-handed alpha
Helix 59	AG5	B	350	362	Right-handed alpha
Helix 60	AG6	B	366	381	Right-handed alpha
Helix 61	AG7	B	382	383	Right-handed 310
Helix 62	AG8	B	384	386	Right-handed 310
Helix 63	AG9	B	387	401	Right-handed alpha
Helix 64	AH1	B	403	421	Right-handed alpha
Helix 65	AH2	B	428	435	Right-handed alpha
Helix 66	AH3	B	441	454	Right-handed alpha
Helix 67	AH4	B	455	459	Right-handed 310
Helix 68	AH5	B	461	472	Right-handed alpha
Helix 69	AH6	B	477	495	Right-handed alpha
Helix 70	AH7	B	499	512	Right-handed alpha
Helix 71	AH8	B	516	533	Right-handed alpha
Helix 72	AH9	B	535	542	Right-handed alpha
Helix 73	AI1	B	556	566	Right-handed alpha
Helix 74	AI2	B	569	575	Right-handed alpha
Helix 75	AI3	B	577	581	Right-handed 310
Helix 76	AI4	M	25	36	Right-handed alpha
Helix 77	AI5	M	74	94	Right-handed alpha
Helix 78	AI6	M	97	104	Right-handed alpha
Helix 79	AI7	M	104	115	Right-handed alpha
Helix 80	AI8	M	125	129	Right-handed 310
Helix 81	AI9	M	414	418	Right-handed 310
Helix 82	AJ1	S	24	40	Right-handed alpha
Helix 83	AJ2	S	77	95	Right-handed alpha
Helix 84	AJ3	S	99	106	Right-handed alpha
Helix 85	AJ4	S	106	117	Right-handed alpha
Helix 86	AJ5	S	127	139	Right-handed alpha

There are 8 sheets in PDB entry 6YAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	252	253	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	19	first strand
Strand 2	M	4	8	anti-parallel
Strand 3	M	63	69	anti-parallel
Strand 4	M	53	60	anti-parallel
Strand 5	M	47	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	116	117	first strand
Strand 2	M	120	121	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	245	248	first strand
Strand 2	M	270	279	anti-parallel
Strand 3	M	191	205	anti-parallel
Strand 4	M	172	185	anti-parallel
Strand 5	M	419	433	parallel
Strand 6	M	386	392	anti-parallel
Strand 7	M	317	325	anti-parallel
Strand 8	M	350	358	anti-parallel
Strand 9	M	341	345	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	263	265	first strand
Strand 2	M	211	216	anti-parallel
Strand 3	M	401	407	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	287	294	first strand
Strand 2	M	300	309	anti-parallel
Strand 3	M	363	372	anti-parallel
Strand 4	M	330	337	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	65	71	anti-parallel
Strand 4	S	55	61	anti-parallel
Strand 5	S	49	52	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	S	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAE