Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YAF entry

There are 5 chains in PDB entry 6YAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9GLY 621
B
 SER 4VAL 582
M
 MET 1CYS 446
P
 ASP 1ASN 6
S
 MET 1GLU 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 6YAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
25 45Right-handed alpha
Helix 3
AA3
A
52 70Right-handed alpha
Helix 4
AA4
A
76 84Right-handed alpha
Helix 5
AA5
A
87 101Right-handed alpha
Helix 6
AA6
A
105 122Right-handed alpha
Helix 7
AA7
A
124 139Right-handed alpha
Helix 8
AA8
A
140 147Right-handed alpha
Helix 9
AA9
A
149 156Right-handed alpha
Helix 10
AB1
A
162 179Right-handed alpha
Helix 11
AB2
A
180 183Right-handed 310
Helix 12
AB3
A
188 196Right-handed alpha
Helix 13
AB4
A
200 218Right-handed alpha
Helix 14
AB5
A
223 239Right-handed alpha
Helix 15
AB6
A
254 268Right-handed alpha
Helix 16
AB7
A
275 292Right-handed alpha
Helix 17
AB8
A
299 318Right-handed alpha
Helix 18
AB9
A
323 338Right-handed alpha
Helix 19
AC1
A
342 357Right-handed alpha
Helix 20
AC2
A
362 368Right-handed alpha
Helix 21
AC3
A
369 379Right-handed alpha
Helix 22
AC4
A
383 397Right-handed alpha
Helix 23
AC5
A
398 414Right-handed alpha
Helix 24
AC6
A
418 436Right-handed alpha
Helix 25
AC7
A
438 453Right-handed alpha
Helix 26
AC8
A
458 473Right-handed alpha
Helix 27
AC9
A
475 489Right-handed alpha
Helix 28
AD1
A
493 508Right-handed alpha
Helix 29
AD2
A
509 511Right-handed 310
Helix 30
AD3
A
518 531Right-handed alpha
Helix 31
AD4
A
534 552Right-handed alpha
Helix 32
AD5
A
555 564Right-handed alpha
Helix 33
AD6
A
565 571Right-handed alpha
Helix 34
AD7
A
574 588Right-handed alpha
Helix 35
AD8
A
593 599Right-handed alpha
Helix 36
AD9
A
611 620Right-handed alpha
Helix 37
AE1
B
13 23Right-handed alpha
Helix 38
AE2
B
26 43Right-handed alpha
Helix 39
AE3
B
47 49Right-handed 310
Helix 40
AE4
B
50 58Right-handed alpha
Helix 41
AE5
B
62 78Right-handed alpha
Helix 42
AE6
B
83 96Right-handed alpha
Helix 43
AE7
B
99 112Right-handed alpha
Helix 44
AE8
B
116 131Right-handed alpha
Helix 45
AE9
B
134 149Right-handed alpha
Helix 46
AF1
B
155 168Right-handed alpha
Helix 47
AF2
B
173 188Right-handed alpha
Helix 48
AF3
B
200 214Right-handed alpha
Helix 49
AF4
B
215 227Right-handed alpha
Helix 50
AF5
B
233 245Right-handed alpha
Helix 51
AF6
B
251 267Right-handed alpha
Helix 52
AF7
B
274 284Right-handed alpha
Helix 53
AF8
B
284 292Right-handed alpha
Helix 54
AF9
B
295 313Right-handed alpha
Helix 55
AG1
B
315 325Right-handed 310
Helix 56
AG2
B
331 345Right-handed alpha
Helix 57
AG3
B
350 363Right-handed alpha
Helix 58
AG4
B
366 383Right-handed alpha
Helix 59
AG5
B
384 400Right-handed alpha
Helix 60
AG6
B
403 421Right-handed alpha
Helix 61
AG7
B
426 435Right-handed alpha
Helix 62
AG8
B
441 456Right-handed alpha
Helix 63
AG9
B
461 470Right-handed alpha
Helix 64
AH1
B
477 495Right-handed alpha
Helix 65
AH2
B
496 498Right-handed 310
Helix 66
AH3
B
499 513Right-handed alpha
Helix 67
AH4
B
516 531Right-handed alpha
Helix 68
AH5
B
533 542Right-handed alpha
Helix 69
AH6
B
556 564Right-handed alpha
Helix 70
AH7
B
565 567Right-handed 310
Helix 71
AH8
B
569 575Right-handed alpha
Helix 72
AH9
M
25 36Right-handed alpha
Helix 73
AI1
M
74 94Right-handed alpha
Helix 74
AI2
M
97 103Right-handed alpha
Helix 75
AI3
M
104 115Right-handed alpha
Helix 76
AI4
M
128 133Right-handed alpha
Helix 77
AI5
M
144 157Right-handed alpha
Helix 78
AI6
M
264 272Right-handed alpha
Helix 79
AI7
S
24 42Right-handed alpha
Helix 80
AI8
S
76 95Right-handed alpha
Helix 81
AI9
S
99 117Right-handed alpha
Helix 82
AJ1
S
127 139Right-handed alpha
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There are 8 sheets in PDB entry 6YAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
5 8first strand
Strand 2
M
64 69anti-parallel
Strand 3
M
54 58anti-parallel
Strand 4
M
47 49anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
116 117first strand
Strand 2
M
120 121anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
256 258first strand
Strand 2
M
281 290anti-parallel
Strand 3
M
190 205anti-parallel
Strand 4
M
172 186anti-parallel
Strand 5
M
435 442parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
213 216first strand
Strand 2
M
412 416anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
298 307first strand
Strand 2
M
311 320anti-parallel
Strand 3
M
374 382anti-parallel
Strand 4
M
344 345anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
352 356first strand
Strand 2
M
361 370anti-parallel
Strand 3
M
327 336anti-parallel
Strand 4
M
398 402anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
16 19first strand
Strand 2
S
4 9anti-parallel
Strand 3
S
65 70anti-parallel
Strand 4
S
56 61anti-parallel
Strand 5
S
49 51anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
118 119first strand
Strand 2
S
122 123anti-parallel
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