Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YAQ entry

There is 1 chain in PDB entry 6YAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32PRO 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6YAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 44Right-handed 310
Helix 2
AA2
A
49 55Right-handed alpha
Helix 3
AA3
A
76 90Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
147 157Right-handed alpha
Helix 6
AA6
A
172 178Right-handed alpha
Helix 7
AA7
A
185 190Right-handed alpha
Helix 8
AA8
A
191 194Right-handed 310
Helix 9
AA9
A
216 224Right-handed alpha
Helix 10
AB1
A
256 269Right-handed alpha
Helix 11
AB2
A
286 292Right-handed alpha
Helix 12
AB3
A
301 312Right-handed alpha
Helix 13
AB4
A
333 346Right-handed alpha
Helix 14
AB5
A
362 367Right-handed alpha
Helix 15
AB6
A
367 379Right-handed alpha
Helix 16
AB7
A
397 406Right-handed alpha
Helix 17
AB8
A
427 429Right-handed 310
Helix 18
AB9
A
458 460Right-handed 310
Helix 19
AC1
A
461 479Right-handed alpha
Helix 20
AC2
A
492 501Right-handed alpha
Helix 21
AC3
A
503 515Right-handed alpha
Helix 22
AC4
A
521 525Right-handed 310
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There are 5 sheets in PDB entry 6YAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
70 72anti-parallel
Strand 3
A
115 118parallel
Strand 4
A
96 99parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
139 143anti-parallel
Strand 3
A
232 239anti-parallel
Strand 4
A
196 202anti-parallel
Strand 5
A
208 212anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
241 242anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 285first strand
Strand 2
A
320 329anti-parallel
Strand 3
A
246 254anti-parallel
Strand 4
A
355 361anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 425first strand
Strand 2
A
446 455anti-parallel
Strand 3
A
389 394anti-parallel
Strand 4
A
484 486anti-parallel
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