Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YAT entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6YAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 18ASP 176
A
 MET 178ASN 182
A
 VAL 184GLN 308
B
 VAL 29ASP 176
B
 MET 178ASN 182
B
 VAL 184SER 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6YAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed alpha
Helix 2
AA2
A
66 80Right-handed alpha
Helix 3
AA3
A
110 118Right-handed alpha
Helix 4
AA4
A
122 143Right-handed alpha
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
A
187 191Right-handed 310
Helix 7
AA7
A
192 197Right-handed alpha
Helix 8
AA8
A
204 220Right-handed alpha
Helix 9
AA9
A
228 236Right-handed alpha
Helix 10
AB1
A
246 250Right-handed 310
Helix 11
AB2
A
251 262Right-handed alpha
Helix 12
AB3
A
271 276Right-handed alpha
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
286 289Right-handed 310
Helix 15
AB6
A
290 305Right-handed alpha
Helix 16
AB7
B
69 80Right-handed alpha
Helix 17
AB8
B
110 118Right-handed alpha
Helix 18
AB9
B
122 143Right-handed alpha
Helix 19
AC1
B
151 153Right-handed 310
Helix 20
AC2
B
187 191Right-handed 310
Helix 21
AC3
B
192 197Right-handed alpha
Helix 22
AC4
B
204 220Right-handed alpha
Helix 23
AC5
B
228 236Right-handed alpha
Helix 24
AC6
B
246 250Right-handed 310
Helix 25
AC7
B
251 262Right-handed alpha
Helix 26
AC8
B
271 276Right-handed alpha
Helix 27
AC9
B
278 283Right-handed alpha
Helix 28
AD1
B
286 289Right-handed 310
Helix 29
AD2
B
290 305Right-handed alpha
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There are 6 sheets in PDB entry 6YAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 39first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
97 102anti-parallel
Strand 5
A
88 94anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
163 165anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 39first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
55 62anti-parallel
Strand 4
B
97 103anti-parallel
Strand 5
B
88 94anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
155 157anti-parallel
Strand 3
B
163 165anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
172 173anti-parallel
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